agmo (agmo)


Basic Information

Item Value
gene id agmo
gene name agmo
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11431963 ~ 11495096 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684128.1
AGGGCAGCATGGTAAACATTCACCCAGAGTACAAAAGTCACTTAGCTGTATTGAGAATATAATCCCTgcacagaagcagcagcagcggggTTGAACACTGCATTGTGGGAGCTGGGCTGGAGCTCTGCAGGTTGTTTTCAGGCTGACTGGGACAGTGTACAGCTTCACACAGCACAATAATGGCCCGGGAGGAGAGCGGAGACCTCACGGTCTCTCAGGGCACGCGCATGCTGTTTTATCTGATGACGCCGAACGAGACGTCGTTTTCAGACGTGGACGGGGTGCCCCGCTATGTTCAGAAGGCGACTCCTTTCTTCGTTGGACTGGTCTTGCTGGAGGTGTTTGTGGCCTGGTTGAAGACTGGTGACCTGCTGATTAAAATCAATGATGGGACCACATCTCTCGCAGCAGGAATGATATCCAGACTGCCTCAtctctttgTCAGGAGTCTGGAAGTGTCCAGCTACATCTATGTTTGGAACAACTTCCACATTTTAGAGCTACCCTGGGATTCAGCTTGGACGTGGTGGCTGGCGTTTCTTGGTGTGGACTTTGGATACTACTGGGTTCATCGATTTGCCCATGaggTAAATCTTCTGTGGGCTGCTCATCAAGTTCATCACAGCTCAGAGTACTACaatctgaccacagcactgcGACAGTCCGTCACCCAGCAGTGCGCCTCATGGgtGTTCTATCTTCCAATGGCCTTGATAGTTCCACCGTCAGTCTTTGCTGTTCACATTCAGTTTAACTTGCTCTACCAGTTCTGGATCCACACAGAGGTTGTCAGAGATCTCGGTCCTCTTGAGTGGATCCTAAATACGCCCAGCCACCATAGAGTTCATCATGGACGAAACCTGTACTGTATTGATAGGAATTATGGAGGCACTCTCATTATTTGGGACCGGCTATTTGGAACTTTTACTCCAGAAGGTGATAAAGTTGTGTATGGACTTACACACCCTATTAACACTTTTGACATCATGTCTGTTCAgTTTCATTACTACCCGTACCTGTGGGAGCAGTGGCACAAAGCTGAGGGTATAGGAAACAAGTTGTCAATCATCTTTAAAGGACCGAGCTGGGCTCCGGGGAAGCCTAGACTGGGGGATCATGCAGAGGTGCCAGTGgtGACAGGAGATGAACTGCCACACAATCCAAGATGGGCGCCTGCACTGCAGCTCTATGTGCACATACAGTTCCTGCTCGTGCTCGGCGTTTACAATGACTTGTTTGCAACGCAGCATATGCTGTCTCAGAtgactgtgctgctgctgaccGGCTACAtattactcacactcacttccCTGGGTTACATCATAGACCAAAGTCCTAATGCTGCTGTGTGGGAAATGCTGCGCTGTCTGATCATGATGGCCCTCTACAGGTTTGGCTGGATCAGTCCTCTGATGTCTCAACTGGCTTTTGCCACCGAGgtttttgtgtctctctctgcacTCTACTGGGGCTTACAGTGCTTCACCCAGACTGGCAAGGAGAAGATCCACTGATTAAAAGCTTAACGGACCAACAGAAATCACTGACACAAAGCTGTATTATGCAATATTCTAACTATGCAGTTGTTAATTAGAGATAAATATATTGGCATTTGTAGAAGcttttatccagagtgacttgtTTGAAAGTCATGTAattgttttctgtatttagtacCTTAAGTAGCAAGATTTATGTTGGAGGTGCTTTTGTTTACTGTGTATTTTGATCAGAACAATACACAGATATTTTAATATAGAATTTACAATGAACAATTACTTTTGTTCTGCTATTGCAATGTTTAAATATAAGGGCTATGTATTCTGTTATTCAACAATACATTAGAGAATTTATAAGTATGGCACTTTGTATTCAGTAGATAAGAAACTATAAAAAGGTACTGTTGCCTAGATGGAACGAATAAGCATGTTTTTGCTGGGCTTTGCTGAATATTTTAGGACATAAAGGACCTTTGCCAGTATATCAAGACCTGCCTAAGACTGATTAATaggggctatatatatatatatatatattagttctGTCAggcgattaaaaaaataatcaaa

Function

symbol description
agmo Predicted to enable glyceryl-ether monooxygenase activity and iron ion binding activity. Predicted to be involved in ether lipid metabolic process and membrane lipid metabolic process. Predicted to act upstream of or within lipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human AGMO (alkylglycerol monooxygenase).

NR:

description
PREDICTED: alkylglycerol monooxygenase

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0006643 membrane lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0046485 ether lipid metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0050479 glyceryl-ether monooxygenase activity molecular_function

KEGG:

id description
K15537 AGMO; alkylglycerol monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684128.1 True 2069 mRNA 0.45 13 11431963 11495096

Neighbor

gene id symbol gene type direction distance location
ispd ispd coding upstream 67638 11320363 ~ 11364325 (+)
sostdc1 sostdc1 coding upstream 112827 11314972 ~ 11319136 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding upstream 128081 11296569 ~ 11303882 (+)
LOC111195540 cdkl1,LOC108424097 coding upstream 173302 11257741 ~ 11258661 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding upstream 315296 11092157 ~ 11116667 (+)
etv1 etv1,LOC107683220,LOC107730861 coding downstream 10275 11505371 ~ 11610772 (+)
vwde vwde coding downstream 237833 11732929 ~ 11767714 (+)
LOC103026019 lsr,LOC108427013 coding downstream 295935 11791031 ~ 11805598 (+)
LOC103031217 mag,LOC108427016,LOC108277883,LOC107752306,LOC107683144,LOC107587088,LOC107704773 coding downstream 315079 11810175 ~ 11843921 (+)
LOC103031523 NA coding downstream 356806 11851902 ~ 11872341 (+)
G2918 NA non-coding upstream 119355 11312381 ~ 11312608 (+)
G2907 NA non-coding upstream 150002 11281256 ~ 11281961 (+)
G2902 NA non-coding upstream 162797 11268905 ~ 11269166 (+)
G2896 NA non-coding upstream 270333 11161415 ~ 11161630 (+)
G2860 NA non-coding upstream 361019 11070035 ~ 11070944 (+)
G2970 NA non-coding downstream 29549 11524645 ~ 11536611 (+)
G2969 NA non-coding downstream 79855 11574951 ~ 11612299 (+)
G2979 NA non-coding downstream 131502 11626598 ~ 11627779 (+)
LOC111192815 NA non-coding downstream 134190 11629286 ~ 11630831 (+)
LOC111195845 arl4a,arl4aa non-coding downstream 203461 11698557 ~ 11711348 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 7512 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 143117 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 152786 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 1688472 9634093 ~ 9743491 (+)
G2509 NA other upstream 1761838 9631865 ~ 9670125 (+)
G3096 NA other downstream 429354 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1487529 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2722711 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 2949462 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 3345197 14840293 ~ 14845626 (+)

Expression


Co-expression Network