LOC103031523


Basic Information

Item Value
gene id LOC103031523
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11851902 ~ 11872341 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685259.1
CTCTTTTAAAAGTGGAAGTGGGAAGAAGGTTGTGAAAAACAGAACGACCTGTGGCCAAACAAGATTAAGTTCTGGGCAGAGGAAGACGTGAACGAAAGAAAACGATCAAGACTTGGGCTGAGTTGAATGTTGCAAGATGAGGGTGCAAGTCGCAATCTTCATGCTGCTTCTCATGCTAGCACAAAGTGTCACATGCGAAGATAAGCTTCTGATGTCTGTTCCACTTCTTAATGCTGGAGAGCAGACCACTCTGAACTGCTCAGCTCCAGACCCATGCCCCAGTACTTGTCCAAACATAACATGGTGGATAAAGAAGAACGGACAAAACAGCACTGAAGTAATTTATAGTGATTATTCACAGAATTATACTCACGTCAATGGTACCATTACCTCAATGTTACCCTTCATACCTTCAGTGGAGCAGCACAATGCTGAAATTGTGTGTGCTGTGAGCTATGGGAATGTTACCTTTAATGTCACCAGGACCCTGCAGATAACCTatttgaaGAATGCAACAATCACAGGAAATTTGACTGTAAAGAAAGGAGAGACACTGAATCTGAACTGCAGCGCTGAAAGTAATTCACATCCATTAAACATCTCCTGGAGTTTTAGAGGGGCTTCAGGTTCACTTCAGAATAAAACTACTGACGACACACTCACCATAACCAGTGTTAGCAGCGAACATGCAGGGGAATATGTTTGCACCGTTCAGAAGTTCAATCTGACTCTGAATACCTATGTGAAAGTCACTGTGATAGATCAACCCATGATCCTCAATAATTCAACATGTTTTCAGCTGGAGAAGAGTTTGAAGTGCTCTTGTCTTTGTAAAGATGTTGAAGGACGCCTAAATGGATCTGTTGTAAACAGCACCATTAGAATAAATGGCATGACGTGTGGATGCGAGAACGACGCTGGCAATAAAACACCAGTAAAAGGAGAGACTGAGAACTTACTGAGCGTAAGATCAATCCTCACATTTCTGGTGGGAGCAGCAAGCACAGCAGTCATCTTCTGCATTGCGCTGTGCTTTGTTGGCATGTGCATAAGGTGTGGAACTGTCAAAGCAGTGGATGGAAATGCAAACAAAGCAGATGTTAAACTGGATGCTGTTAAAATTCAACACAATTCTGCTGGCACAGACCAAGCAGAAGAAGATGAACACACTCCACTGCGAGGGCGCCCTGCTGCAGCggccacacacacagctgcagtgAGAGGTGAAGTCAAGGTGGAGGACACACCAGGAGAAGACAGGCCTTCAGGAGAGGAGAAGGCAgcaggagagaaagagcagaaCGAAGTGGACTACGCCTGTATCGACTACTCACTTCTACAGGACAGAGGAGCTGAGGCCCAGAAGGAGCAAAGCGAGGAGACGGAGTACGCAGAGATCCAGATTAAGAAACAGGCTGAGGAAGAGGGAGCTGAGGACCTGCAGGGTGAAGAGGTCCAGGGTGAAGCCCAGGGGTTAGAGAATCAAGAGCAGGtggagggagaggaggaggagatacAGGTGTAATGCTTTGAAATAAAGAGTTACTTTTATGTTAAACTCCCGTACTGAAATATGATACATGGCAAAGTGGATTTAGATATAGGACACAAATGTGAATATTAGAATTCCCTAATATTGATCGTATATTTGTGCCATgattattcaatttttttttcaatatgggACATACAGAATTCAGCTATATATTCAGCTATATTACAACATGTACAAACACGTGTGTAACACTTACGTTTACCCATATATTTGTATAATAGTATGGTATAAATTATATGTATAACTGCAAATCCCATATATTTGATCTGTATATTATGCAAATGTttcagtatattatatttttcgcatataaatgtatatagtgtatatgcacacata
>XM_022685272.1
TCTTTTAAAAGTGGAAGTGGGAAGAAGGTTGTGAAAAACAGAACGACCTGTGGCCAAACAAGATTAAGTTCTGGGCAGAGGAAGACGTGAACGAAAGAAAACGATCAAGACTTGGGCTGAGTTGAATGTTGCAAGATGAGGGTGCAAGTCGCAATCTTCATGCTGCTTCTCATGCTAGCACAAAGTGTCACATGCGAAGatttgaaGAATGCAACAATCACAGGAAATTTGACTGTAAAGAAAGGAGAGACACTGAATCTGAACTGCAGCGCTGAAAGTAATTCACATCCATTAAACATCTCCTGGAGTTTTAGAGGGGCTTCAGGTTCACTTCAGAATAAAACTACTGACGACACACTCACCATAACCAGTGTTAGCAGCGAACATGCAGGGGAATATGTTTGCACCGTTCAGAAGTTCAATCTGACTCTGAATACCTATGTGAAAGTCACTGTGATAGATCAACCCATGATCCTCAATAATTCAACATGTTTTCAGCTGGAGAAGAGTTTGAAGTGCTCTTGTCTTTGTAAAGATGTTGAAGGACGCCTAAATGGATCTGTTGTAAACAGCACCATTAGAATAAATGGCATGACGTGTGGATGCGAGAACGACGCTGGCAATAAAACACCAGTAAAAGGAGAGACTGAGAACTTACTGAGCGTAAGATCAATCCTCACATTTCTGGTGGGAGCAGCAAGCACAGCAGTCATCTTCTGCATTGCGCTGTGCTTTGTTGGCATGTGCATAAGGTGTGGAACTGTCAAAGCAGTGGATGGAAATGCAAACAAAGCAGATGTTAAACTGGATGCTGTTAAAATTCAACACAATTCTGCTGGCACAGACCAAGCAGAAGAAGATGAACACACTCCACTGCGAGGGCGCCCTGCTGCAGCggccacacacacagctgcagtgAGAGGTGAAGTCAAGGTGGAGGACACACCAGGAGAAGACAGGCCTTCAGGAGAGGAGAAGGCAgcaggagagaaagagcagaaCGAAGTGGACTACGCCTGTATCGACTACTCACTTCTACAGGACAGAGGAGCTGAGGCCCAGAAGGAGCAAAGCGAGGAGACGGAGTACGCAGAGATCCAGATTAAGAAACAGGCTGAGGAAGAGGGAGCTGAGGACCTGCAGGGTGAAGAGGTCCAGGGTGAAGCCCAGGGGTTAGAGAATCAAGAGCAGGtggagggagaggaggaggagatacAGGTGTAATGCTTTGAAATAAAGAGTTACTTTTATGTTAAACTCCCGTACTGAAATATGATACATGGCAAAGTGGATTTAGATATAGGACACAAATGTGAATATTAGAATTCCCTAATATTGATCGTATATTTGTGCCATgattattcaatttttttttcaatatgggACATACAGAATTCAGCTATATATTCAGCTATATTACAACATGTACAAACACGTGTGTAACACTTACGTTTACCCATATATTTGTATAATAGTATGGTATAAATTATATGTATAACTGCAAATCCCATATATTTGATCTGTATATTATGCAAATGTttcagtatattatatttttcgcatataaatgtatatagtgtatatgcacacata

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG:

id description
ko05140 Leishmaniasis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685259.1 True 1894 mRNA 0.42 7 11851902 11872341
XM_022685272.1 False 1593 mRNA 0.42 6 11851903 11872341

Neighbor

gene id symbol gene type direction distance location
LOC103031217 mag,LOC108427016,LOC108277883,LOC107752306,LOC107683144,LOC107587088,LOC107704773 coding upstream 7981 11810175 ~ 11843921 (+)
LOC103026019 lsr,LOC108427013 coding upstream 46304 11791031 ~ 11805598 (+)
vwde vwde coding upstream 84188 11732929 ~ 11767714 (+)
etv1 etv1,LOC107683220,LOC107730861 coding upstream 241130 11505371 ~ 11610772 (+)
agmo agmo coding upstream 356806 11431963 ~ 11495096 (+)
LOC103026933 LOC108426918 coding downstream 4585 11876926 ~ 11880070 (+)
LOC103027225 NA coding downstream 11961 11884302 ~ 11910531 (+)
LOC103046499 cadm2,cadm2b,LOC103046499,LOC108426969 coding downstream 415778 12288119 ~ 12602536 (+)
LOC103047626 LOC103047626,LOC108426971 coding downstream 751123 12623464 ~ 12638259 (+)
mipep mipep,LOC107724959,LOC106581117 coding downstream 768824 12641165 ~ 12668769 (+)
G2983 NA non-coding upstream 97791 11731522 ~ 11754111 (+)
LOC111195845 arl4a,arl4aa non-coding upstream 140554 11698557 ~ 11711348 (+)
G2985 NA non-coding upstream 145470 11704873 ~ 11706432 (+)
LOC111192815 NA non-coding upstream 221071 11629286 ~ 11630831 (+)
G2979 NA non-coding upstream 224123 11626598 ~ 11627779 (+)
LOC111196183 NA non-coding downstream 85734 11958075 ~ 11958465 (+)
G3129 gbe1 non-coding downstream 234050 12106391 ~ 12109036 (+)
G3179 NA non-coding downstream 374636 12246977 ~ 12252612 (+)
G3205 NA non-coding downstream 704739 12577080 ~ 12658307 (+)
G3232 NA non-coding downstream 842277 12714618 ~ 12720840 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 427451 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 563056 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 572725 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 2108411 9634093 ~ 9743491 (+)
G2509 NA other upstream 2181777 9631865 ~ 9670125 (+)
G3096 NA other downstream 52109 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1110284 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2345466 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 2572217 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 2967952 14840293 ~ 14845626 (+)

Expression


Co-expression Network