LOC103027225


Basic Information

Item Value
gene id LOC103027225
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11884302 ~ 11910531 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022685327.1
GCACGCCCACAGCCGAACACAACCAAAGTGCTTGGGTTAAGTTGAGTTAGAGCTGTGTGTTTAGCTGAATCTTAACCTAATAAATCAAAAGCCTAAAATACTTAATCTAATTATACACGATCTGCAGGTCACACTGCATGCACTAGAAGGATGGATGCTGAATGGTGGCTGGTTTTTCTACTCGCCAACTTGTGTTCATGCAGTTCACAGTACGAAATAAACATAGGGGAGGCAGAAATGCTTGCAGCAGACGAAGGATCGTGTGTCACCATTGACTGCATACATACAAACACTCGGACAGATAAGCAGCTATTCTGGTTTAAGGACGCTGtgtataataaagaaaaaaaaatatttgagggGACCATTGTTTATAGTAACAGGAAAGACCGCCCACAAACTTCTGGGCGACATTACGCCCACAGAGTGCAATACCAGAGTAATGCCAATTATCCAAAGGCATCATGCACATTAAGAATTAATGACCTGGAAAAAGCTGACAGTGGAAACTACAGCTTTAGGACTATAGGAAGCTATTATAGATATATGAGTAAACATGTGAGCCTCACTGTAAAAGACAACCCTTGCAAGGTCCATATTGAGCCAGAGGATAAGCAGATGCTCACAGAAGGTAACAACGTGAGTCTTCGGTGTTCAACATCAGCACAGTGTTCACATCATCCTGAATGGTACAAAGTCATCTCTGAGAGAGTTTCTGAGCCGATGGAAGTCATTACAAACCCTGAAACTCAAGATGAAGgttggaataaaatcacagagctgAAGTTATCAGTCACCTGGGAGGATAATGGGAGAAGTTTCTCGTGCCGTCCAGCTGGAAGCAAAGATGACTGCCAGGCCAGGAATATCACTCTGGAAGTTGAATACAAACCTAGAGAAACCAAGGTACAGAACAGCCCTGAGACTGTGAAAGAAGGAGATATCATCACTCTGTTCTGCTCCAGCAAGGCTCACCCTAATGCTTCCTTCACCTGgtttaaaaacaacagtttgaTTCAAGGGGGCTCATCTGAGTACAAAAAGTATAACATAAATCCAGCAGACAGTGGAAATTACAGCTGTCAAGCCAAAAATTATCTGGGGACAGACGTTTCACTCCCAGTTTGGATCAATGTTTTGTATGCTCCAAAAGATGTTCGAATCAAGGCCGAAACCAGTGATGTCAAAATAGGGGATACACTCCATCTGACGTGCTCCGAGCAAAGCAGCAATCCTGCTCCACATGCGTACTCTTGGTATAAAGATGGTGTTAAGTTATTAGAAACAAGTTCATTACTTACTATTACAGAACTAAAGCGGAGTCATTCTGGATGGTACCATTGTGAGGCCGAAAATCGCATAAAGTCTACAGCCTCTGAAAAGATTCAAATATCTGTACAGTATGCTCCAATGAACACTTACATTACAGGCTCGTCACAAATAAAGCTTAGATCAACCTTTATCCTCACCTGTTTAACCGATGCCAATCCTCCTGCTTATCATTATTCCTGGTACTTTAAGTCAGAAGGCACCCAGCAGTATTTTCTCCTTCCACAAACGACTCAGTCATATCAGATTGAGGAGGTGATTATTGAAGATTCTGGATCGTATATCTGCAATTCTAAGAATATTATTGGTGCAGGACCAAACTCCACGGAATTCAAATTTAATGTACTCTatcCACCAAGTCAACCTAATCTGACCATGGTAGAGACTATAAGAGATGATGAAAAGCTTTCCATCAGCTGCACTGTAAAAAGCTATCCTGCAGCAGAAATGACACTGAGCAGAATCACTCTCCAAAACCCAGAAGATGTGCTGATAATACAAGACCAGACCAGCACTATCTCTTTCTCTGGTACTGTGTCTGAAGCACACGCTGGTCAGTACACCTGCAGAGCCAAAAACTCAGAGGGACAATCCCACACAACACGAGAGCTGAAGGTTTTGTATGCCCCTAAAGATGTTCAAGTATTAGATGTTATAGGTCAAAACTGGAAGGAAGGAAACAACCTTGAACTGATATGTACAGCCCATTCTGAGCCCACTGTGTCCACATACACATGGGAGAAATCatctgggaaggagattcagaGCAAATCAGAAAAAGTGGGAGGGACACAGAAACTAAACATATATAACCTTACCCCGGCTGACTCTGGGCATTATTTCTGCACCGCCGGAAATGAGCTTGGCTATACAAGATCTGCATCCTTCGAGATTAGAGTTAAATATGGCCCAAACATAACAATTACCCATAACTTGACCTCATTGAATGACTGGGATGGGAAAGCTCCAGTCAGCCTGACCTGCAATGTAGACTGTTATCCTCCAGTTACAAATTATCAATGGTTCACAAATGAGGAAAATACAATCTTGTCCTATGATCAGACCTACATTGTTTACCCACAAAAGCAAGGAACCTACTACTGCGTTGCAAAAAATGAAGTAGGGGAGTCTACATCTCACCCAGTCAAATTGTGGTTTAAAGgaCTCTTTCAACAGATTTTTCTTTGGATCTTGATCTCTGTATTTTTCCTCTGCATACTGATTGTTGTCATATTGCTGGTGCACAGGATTGTCTTGACAACAGAATCTTCAGATGGAACAGACAGCCAATCATTTTTCATCCCAGCTATTCGAGCTCGGTTTTTAACAGGATCCCAGAACAACACTAGAGAAAATCTGGTGATGGAAGGAGAAATGGAGCCTTACAGTCACAGACACAACCAGTCATCTTCCACTGCACGCACTTATATCTCAGCCAACATACAGAACCATGCAGGAAGGTCAGTTCCAAACATTCACACTGAGTATGATGCTGTAAAAAGGCCAGAAGCCATTCAGAAGGATCCAGCTATGTCCACTGTGAACTATGCTAATCTGCAGATCAAGAACCACAATAATCCAAGTAAAAGTGTAAACAGCAGCTGTGAAGCTGGACCAGTGTATGCTGTAGTTtccaaaaaaaagcagaatacaaag

Function

GO: NA

KEGG:

id description
ko04662 B cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022685327.1 True 2985 mRNA 0.42 15 11884302 11910531

Neighbor

gene id symbol gene type direction distance location
LOC103026933 LOC108426918 coding upstream 4232 11876926 ~ 11880070 (+)
LOC103031523 NA coding upstream 11961 11851902 ~ 11872341 (+)
LOC103031217 mag,LOC108427016,LOC108277883,LOC107752306,LOC107683144,LOC107587088,LOC107704773 coding upstream 40381 11810175 ~ 11843921 (+)
LOC103026019 lsr,LOC108427013 coding upstream 78704 11791031 ~ 11805598 (+)
vwde vwde coding upstream 116588 11732929 ~ 11767714 (+)
LOC103046499 cadm2,cadm2b,LOC103046499,LOC108426969 coding downstream 377588 12288119 ~ 12602536 (+)
LOC103047626 LOC103047626,LOC108426971 coding downstream 712933 12623464 ~ 12638259 (+)
mipep mipep,LOC107724959,LOC106581117 coding downstream 730634 12641165 ~ 12668769 (+)
sacs sacs,LOC107670382,LOC107724954 coding downstream 797678 12708209 ~ 12753900 (+)
trappc4 trappc4,LOC107561742,LOC106612982 coding downstream 878370 12788901 ~ 12793303 (+)
G2983 NA non-coding upstream 130191 11731522 ~ 11754111 (+)
LOC111195845 arl4a,arl4aa non-coding upstream 172954 11698557 ~ 11711348 (+)
G2985 NA non-coding upstream 177870 11704873 ~ 11706432 (+)
LOC111192815 NA non-coding upstream 253471 11629286 ~ 11630831 (+)
G2979 NA non-coding upstream 256523 11626598 ~ 11627779 (+)
LOC111196183 NA non-coding downstream 47544 11958075 ~ 11958465 (+)
G3129 gbe1 non-coding downstream 195860 12106391 ~ 12109036 (+)
G3179 NA non-coding downstream 336446 12246977 ~ 12252612 (+)
G3205 NA non-coding downstream 666549 12577080 ~ 12658307 (+)
G3232 NA non-coding downstream 804087 12714618 ~ 12720840 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 459851 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 595456 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 605125 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 2140811 9634093 ~ 9743491 (+)
G2509 NA other upstream 2214177 9631865 ~ 9670125 (+)
G3096 NA other downstream 13919 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1072094 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2307276 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 2534027 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 2929762 14840293 ~ 14845626 (+)

Expression


Co-expression Network