LOC111190477


Basic Information

Item Value
gene id LOC111190477
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14364465 ~ 14369107 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649121.1
CAgaggatctgctgctgctactactactgcgcatgcgcccTGCGCTCATCCAGCCACAGACATCCAGCAATGTTGCTACCTAATGTTTAGAATCTCTGCTCGAGCACAAGCCTGACCAGATGCCCAACTCAAACTTGGTCCGGGTTAGGTCGAGAtctcccaccactttcctcaggcCACGTCAGGTTGCTGCTCAAGAAAATGGACTGTAAGTAACCTCACTGGAATCGAAGTGGAACATGGGAAATCTGATGTGGACTTCACCTTACAAGCACCTGCAAATGAGGGGTACAATAATGGAATATGGTCATACACAAGTGACTTATCACAGCACAGAGGAGGAGGTGAGAACATGAGGCATACACATATAGTTGTGACCATGTACAGCCATACATGGtcacaatttattatttttactatgtaGTCAACGCTCAAAACTGGGTTCATGAAGGTTTAGTATAAGTAGCCTTCGCAGTAAATAAACCACAATTCATACAACATCTTATGGTTTCCATTCCACTGAGAAATTAAGTTGTTTTGAGAGAAAAAGCAGTTCCTACCTAGTATTAAATTAGATTTCCTAATAAAACACTTTGTAAGTGAAGTACTACGTCCCTAATGAACATGTATAAACATGAAATTCTACCTTATGTGTATTTATCCAAACAGAATAACACGTACTGTGCTGCAGTGTGTCTATTAGAGACAATATATTTGCTTCACTGTGTGCAGATTAACAGCCAAGTAAAATCAGATTAGCAAGGATTATAGTGGATATGGCGACAGTCATGGTTTAATGTCAAGCCAGGCCACAAGAACAAAATAATCACGACTTTCAATTAAAACAAGCTTAAAGGGTTTGGCTCATGTGTTACTTGAAATGGAAACAAAAAATTGGAGGATCAAATTAACTGAAATGTAATTAAGATTACTCTgtggaaaaaacaaacacactgacCAGTTTGAGTGCTTGTTTAAGATTGATTATGGACAAATTGAGTGGAATATGGTTGGCTCTCTTACTGTGGACAATGTGATATGGTAATAGGATTTTTCACAAATATGATATGGGTTTTGCAGGATTATGCGGTTCTCGTAAGCACTGTTCTGCCCACTGAAGCAGAATGCCATACTACAGTTAGCAGCGTGCTGAACTAACAGTGATACAAACACTACTTTCCCTATTAAAGGTCAGTGGATTGTGATATTGAATGTGTAgttgtaatgtaataatgttacctattatttatttcaatttgtGATATTTTAGAGATCTTATCACAAAGTAACTAATGCTTCTGCTGCtaaataatattgttaatatttgtgctagattaaatatttaatctaatgCTGACAAAGTCACTGGATTTTCTCTAAAAAGCATTGGGCAAAACTGACTGCAGCACAAGACTCAAAGCTTATACCCCTCTAAATAATAGAGGGGTATACAGCACACTAGAATTGAACTGTGAAACAGTttcactgtgttctctggaaagaTGTTGtctaatacattacatttatgtTAAATTGAGGATGAGATAAGGTGGCCATGATTCAGGCGGAGCTCACCAACACTCGTGTCTCTAAATACTATTAATTCCTTACAGCAATGGTCAGCAGGGACAGTGACACCAATAAAAGCATAATGAACTCTTGATTTTTCAAGAAACAATGACTCAGCACATGTCCCAGTACTTATGTCCCTATAGTACACTTCCAGTGGGTGAGGTAAAATGTAATGAAGGTCTCCAGCTCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649121.1 True 1764 lncRNA 0.38 3 14364465 14369107

Neighbor

gene id symbol gene type direction distance location
ankrd13b ankrd13b coding upstream 37346 14283621 ~ 14327119 (+)
LOC103039353 LOC108440382 coding upstream 151151 14172064 ~ 14213314 (+)
LOC103043284 tspan13 coding upstream 643400 13715172 ~ 13721065 (+)
scarf1 NA coding upstream 660043 13692166 ~ 13704422 (+)
LOC103044209 rilp coding upstream 672574 13678669 ~ 13691891 (+)
LOC103041611 gipr,LOC107714193,LOC107548593,LOC107756746,LOC107685094,LOC106580753 coding downstream 302405 14671512 ~ 14705719 (+)
clip3 clip3,LOC107714192,LOC107685098,LOC107548591,LOC107669746 coding downstream 362000 14731107 ~ 14753636 (+)
LOC103042749 NA coding downstream 397707 14766814 ~ 14802961 (+)
LOC103043061 LOC108425915 coding downstream 446447 14815554 ~ 14822099 (+)
LOC103043366 LOC108425806 coding downstream 478076 14847183 ~ 14859409 (+)
LOC111190024 NA non-coding upstream 108828 14249843 ~ 14255637 (+)
G3524 NA non-coding upstream 116487 14247712 ~ 14247978 (+)
G3515 LOC108440363 non-coding upstream 195505 14157586 ~ 14168960 (+)
G3509 NA non-coding upstream 219774 14144201 ~ 14144691 (+)
G3507 NA non-coding upstream 221562 14141220 ~ 14142903 (+)
G3561 blmh,LOC107743628 non-coding downstream 45182 14414289 ~ 14435581 (+)
G3575 NA non-coding downstream 142033 14511140 ~ 14512789 (+)
G3648 eml2,LOC108277999 non-coding downstream 223826 14592933 ~ 14594059 (+)
G3787 NA non-coding downstream 665659 15034766 ~ 15035187 (+)
G3788 NA non-coding downstream 666835 15035942 ~ 15036582 (+)
LOC103035587 NA other upstream 120085 14217807 ~ 14244380 (+)
G3313 sept5b,LOC108425237 other upstream 1380196 12982625 ~ 12984269 (+)
G3096 NA other upstream 2437215 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 2940014 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 3075619 11288131 ~ 11288846 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 75451 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 471186 14840293 ~ 14845626 (+)
G3736 NA other downstream 592066 14961173 ~ 14963583 (+)
G3790 NA other downstream 669448 15038555 ~ 15038914 (+)
LOC103023550 nf1 other downstream 703733 15072840 ~ 15162956 (+)

Expression


Co-expression Network