LOC111192717


Basic Information

Item Value
gene id LOC111192717
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 26487773 ~ 26492736 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650106.1
TTTAGCAGTGATTAAATAAATTCATATGACTATAGAAGCACTGCTGAAGAAAGTGCATTGCACATTGTTGGGTTTCTTGTACATACAAGTATTTATTGTTCAAGATAGctcaccataaaaaaaaacttcaaagtACATTCAGACTATTAACAAGTGTTATATTTCATTATCatgcttttttcattttatttatgcaccaaatatttctCTATTGAAAATATTCATGcgaaaactacaaaaaacaggtttaagttcatttttttactgtagttGCAGGTATTGAACAAAACATGCCACATCACTTCTCAAACTTAGCAtcagtttaatcagtttaatcagTAATCATCCTCACAATCTGGCTGTTTTACCGTTACAAGATAAAGATACAAGCTGTAGTTTTACGGCTAGGATATTAACATTAGCTGAGCTCATTTAGaattagtgtgtgtttttaaacaaatgacTGGCTGCCTTTCTCTGTGAACATTTTTTCACATGTAACttaagtagcactgctgaggtaaatgtatgactagaacAGCACTACTAAGCTAGATAAAGACGCTTACAACTAAAACTACCCTGCTGAGGAAGCTAACCAGCTAAATGTGTAATCTAGCAGTGCTGAAATAAATTTATATGACTATAGTAGCACTGCCAAAGAAAATATATTGCATTTTGTTGGGTTTCTGCTGgaatattaaaaagtttaagTGTTCAATCAACGTTTTTGATTTGTAGTTtcgcatttgtttttctatgaaaaacaggacaaaataaATTAGGCTATATAATTAAAGGTGAAAATGGCAAATTCACTGAATTCATCCAACTGCTTTAATTAGTtgtaattgttgtaattcagtgTATCCCTTTTATCATGTTTCAGAACTAAATGCTTACCCGTGCCTAATTTAAAAAGGGAAAGAGTTCCAACATAAGGCAAAGTCACCAAATCTAACTTCATATATCAAAAGCAATTTGAATGTGTCTTCTGACTTTAAAAATACAGTGCTGCTGATGGtaaaactgtaatattttactgtaactgtaatacATCtgaaaaaatatgtgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650106.1 True 1076 lncRNA 0.31 3 26487773 26492736

Neighbor

gene id symbol gene type direction distance location
gemin4 NA coding upstream 284289 26198919 ~ 26203484 (+)
tmem199 tmem199 coding upstream 366484 26117106 ~ 26121289 (+)
tusc5 tusc5 coding upstream 538280 25930463 ~ 25949493 (+)
aipl1 aipl1,LOC102791624 coding upstream 558520 25916237 ~ 25929253 (+)
LOC103033293 NA coding upstream 661024 25815278 ~ 25826749 (+)
appbp2 appbp2 coding downstream 271009 26763745 ~ 26777988 (+)
usp32 usp32,LOC108425843 coding downstream 296873 26789609 ~ 26867159 (+)
LOC103040422 LOC108277907,LOC108425840,LOC107734097,LOC107690476,LOC107690468 coding downstream 374499 26867235 ~ 26883997 (+)
tmem97 tmem97 coding downstream 393314 26886050 ~ 26888538 (+)
rad1 rad1,LOC107601739,LOC107585563,LOC107718285 coding downstream 401922 26894658 ~ 26898301 (+)
G6666 NA non-coding upstream 81843 26402779 ~ 26405930 (+)
G6667 NA non-coding upstream 82469 26404629 ~ 26405304 (+)
G6660 NA non-coding upstream 186757 26274540 ~ 26301016 (+)
G6648 NA non-coding upstream 251610 26219962 ~ 26236163 (+)
G6644 NA non-coding upstream 274955 26204800 ~ 26212818 (+)
G6711 NA non-coding downstream 90543 26583279 ~ 26608742 (+)
G6756 NA non-coding downstream 346305 26839041 ~ 26918466 (+)
G6759 NA non-coding downstream 396477 26889213 ~ 26891566 (+)
G6765 NA non-coding downstream 420665 26913401 ~ 26916530 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other upstream 441527 26040156 ~ 26046246 (+)
LOC103027586 LOC108425877 other upstream 1059422 25412194 ~ 25428351 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 2580299 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 2640406 23839993 ~ 23847367 (+)
G5871 NA other upstream 2653943 23832236 ~ 23833830 (+)
LOC103042574 NA other downstream 426555 26919291 ~ 26931495 (+)

Expression


Co-expression Network