LOC111192856


Basic Information

Item Value
gene id LOC111192856
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15660210 ~ 15664348 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650144.1
TCACTTGGCTTTCAGGTGTCGGAGCAGCCGTATACAGTAGGCATCCCACAGAGGGTTGAGGGAATTGTCAGGAAACTGGCCTTGACTACATACATCAGGGTCTTTAAAACGTCCCTCTGGGCGATGATGGACCTGTCCACGTTCTGCTTCTACATGGTATTAGCAAAGACAGTGCATGCAAATTGTTTCCCTGAGAAATGTACAGAAGGCTCTGTTGAAGAAGTCACTGTTGAAGCTTCCCTCCCGTTTCTCTCGAGGACAAACTAATAGGCGCCGCTCCGAGAGGACAACCCGCGGGTCGTTAACTATTTTTACAGTAAGGTTGAGATGGAAAGTAGGTGCCATTGATATTCAGTAAGCCACCCTGGATTTAcatgagaaaatgaaagaggGAGTTCTGGTCTCCCCAGCGCTGCGGTAAAGGCACCACGGTGTAAGTTTGATGTGCTGTAAAGTGACAAAGCAAAGTCTTCTGAAGGACCGTGTCATTCGCTCTGTCATTTCAAATGCATATTCAGCCTTTCCTGCTGTGTCGTTCTGTCTCCGTCACTCATAAGACCTGCTATAATCTCTGATTAACACACAGGCCctgtttaaatgaatgttttacCAGCCTCATCCAGCACCCCGCCAAAAGGGCGCAGAGTTTAACTCATACAGCCAACAAAATCACACGCCACTGTAATTTGAGGCAGCTGAAGAGGGGTGAGAGTTTGAGAAAAATATGAAATTCACCATCCTGTTGAACAGCACGGGAGATAGGAAGCCAGCTGGCTTTACCTGTTTATTTTTAGCATGGGCTGGTGGCAGCAGGTGCACTCTTACTTGTGCTTATGGCATCAATATAAATGAGAGATAATTACTTTTGTGACAACGTGCCAATTAAATTAGACTCCGCAAAACAACATAATAGCAATTTATTATGCTCTGGTGAGCAATAACAAACCCATCATAATTAACACTCCGGTTGCAAGCAAGAGCCGTTTTGTGCCACAAATACAATCTGATTCCCCAAACTAAACATACAGGGCCAAACTCCATCTAAGTCAGATAATGGCATTAAAGGATCCGGGCAAAACGAAGAGCAATTGGTCTCACACATTCTAATGAGTGCGAGCGGATGTGTACGCAGGAGGGCAGAGGGGAGGGGGGCGAGGATGAAATATGATGATATGTTTGGGGTTTGGGAGGTGTTCGCAGTGTCTGTAAATAACACAGACTGTGAGCTTTAGACGGCACACAAATAAATGTTTGACTGAGTTTTCCTCGTGTCATTGAAATACGAGTTTAAAGTAGtatgtaaaacactgttaacGTTAACCAGTCTGTGAATGTTGAAGGGCTGACCAGTCTGTTTTTGGATTCAGTGTTTTGAGatgtcaaaaaaaaatctagctaaatttataaatatgaatatattttcGTTGTCAGACAACAACCTCGTAGCACCATGTTtcgttttacatttttttgagcATATTTTGAAATCAGCATTTGTTCATAAAATTGAGTTTTGGTttttgttcacacagcaggttaaATAACCCAACATTAATTAAATTCTTACCATATTCTTACCATATTTTTAGGATGCTCACACAATGTGATCGATATCTGATCGTGTCCAAACAGATTGTGTAACTGATTTACAGGTGCAAAAGAGCAATGCTTTACTTAAATTTTTGGTGTCATCTTAGGCAGCATCACAGGAGCTATTAAGGAGTTTAACAGCTGGGTTGATCATTGAGAATGGGTTCAAGCTCACTGTAAAAAGGGTCTGTTCTTTTACAGGAAGCAACCTGTTGCCTCGCTCAGAATCCTGTCTCCATTCATTCAGCACTCTACATCTCTCTGTCTGAACTTCTGCTCAGTCTTCCTAGCCTAAGGACATAACTCCAAGTCAGAGACCTTGCCTGGGGCAACCCCTCTAATCTCACATTAGTGTGGGCTCACCTGCACGGTCAGGGTAAGGCAGAGCAGGGCTCTCATGCCCTCTGCCTGCCTGTACAACTCTCTAAGAGTGATCAGCGCAGAGGGTACCACCACCACCGAGCTATTGTACTCTGTCGGAACTGTGTGTCAATCGATGGGCTTATATTCTAAGAGATCTACCACACTGAAGAGTTTACATCCAACACACGTGACTTTGTGCTGGGATATCAGTATGTAAGTTGACTATGAATTTTAGGTTTAGTTAGGAaatggcttgggaacacccaagTGTTAGTTGATGAGTAGTTCTTgacatatgaatatgaattagaactttactcaaacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650144.1 True 2279 lncRNA 0.43 3 15660210 15664348

Neighbor

gene id symbol gene type direction distance location
LOC103023867 msi2b,msi2,LOC108425902,LOC107587484,LOC107682662,LOC108277875,LOC108435815,LOC105028669,LOC106603292 coding upstream 42423 15211657 ~ 15617787 (+)
akap1 akap1b,akap1 coding upstream 473815 15167460 ~ 15186395 (+)
LOC103021895 NA coding upstream 593993 15051474 ~ 15066217 (+)
LOC103047124 ksr1 coding upstream 626551 14972989 ~ 15033659 (+)
wsb1 wsb1,LOC107756317,LOC107587373,LOC107682796,LOC107746651 coding upstream 704866 14940680 ~ 14955344 (+)
LOC103029544 NA coding downstream 45132 15709480 ~ 15729311 (+)
LOC111192347 NA coding downstream 67131 15731479 ~ 15774952 (+)
LOC103028185 NA coding downstream 68939 15733287 ~ 15762061 (+)
LOC103027482 NA coding downstream 225857 15890205 ~ 15892830 (+)
LOC103026903 aldh3a2a,LOC108425811,LOC107586255,LOC107729125,LOC107662794,LOC108277491 coding downstream 270160 15934508 ~ 15940392 (+)
LOC111192011 NA non-coding upstream 4889 15639346 ~ 15655321 (+)
G3808 NA non-coding upstream 41039 15617118 ~ 15619171 (+)
G3855 NA non-coding upstream 122967 15536490 ~ 15537243 (+)
G3840 NA non-coding upstream 284567 15374631 ~ 15375643 (+)
G3825 NA non-coding upstream 369821 15288594 ~ 15290389 (+)
G3894 NA non-coding downstream 98896 15763244 ~ 15772504 (+)
G3917 NA non-coding downstream 221766 15886114 ~ 15888367 (+)
G4120 NA non-coding downstream 492164 16156512 ~ 16157533 (+)
G4158 supt5h,LOC107586261 non-coding downstream 629163 16293511 ~ 16310645 (+)
G4164 NA non-coding downstream 647593 16311941 ~ 16312669 (+)
LOC103023550 nf1 other upstream 497254 15072840 ~ 15162956 (+)
G3790 NA other upstream 621296 15038555 ~ 15038914 (+)
G3736 NA other upstream 696627 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 814584 14840293 ~ 14845626 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 1155195 14444558 ~ 14505015 (+)
LOC103040601 NA other downstream 117290 15781638 ~ 15826103 (+)
G4221 NA other downstream 878594 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 954698 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 2345830 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 2376941 18041289 ~ 18422356 (+)

Expression


Co-expression Network