LOC111194639


Basic Information

Item Value
gene id LOC111194639
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 7162246 ~ 7167800 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651195.1
TCTGTTCGCATGACAAGAAATACAAGAGGCAGATTCAAGAGCTCCAGACTAGAGGCTCAGTCGGGGATGTCACTGGATTCAGAACCTCACACAATTTTGGTGACACATCGTGACACTGCAGTCTCATACAACAAGTAGAACCAGTTACAGCAGTCGGCAGCACACATCCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651195.1 True 172 ncRNA 0.48 3 7162246 7167800

Neighbor

gene id symbol gene type direction distance location
LOC103041009 NA coding upstream 141264 7015308 ~ 7020982 (+)
LOC103037029 NA coding upstream 200688 6946823 ~ 6961558 (+)
LOC103031157 LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding upstream 756264 6381786 ~ 6405982 (+)
LOC111194277 NA coding upstream 834335 6317305 ~ 6327911 (+)
LOC103031751 NA coding upstream 1506191 5631396 ~ 5656055 (+)
LOC103039155 NA coding downstream 13982 7181782 ~ 7188573 (+)
LOC103038844 NA coding downstream 21680 7189480 ~ 7202566 (+)
LOC111192949 NA coding downstream 103065 7270865 ~ 7273307 (+)
LOC103026472 LOC108432989,LOC108277724 coding downstream 149213 7317013 ~ 7779860 (+)
LOC111192950 LOC108432968 coding downstream 1508862 8676662 ~ 8697582 (+)
G2025 NA non-coding upstream 29050 7131207 ~ 7133196 (+)
G1980 NA non-coding upstream 279907 6880551 ~ 6882339 (+)
G1975 NA non-coding upstream 328941 6832936 ~ 6833305 (+)
G1962 NA non-coding upstream 455871 6702100 ~ 6706375 (+)
G1963 NA non-coding upstream 492444 6669573 ~ 6669802 (+)
G2039 dhx16,LOC107704755 non-coding downstream 8783 7176583 ~ 7177824 (+)
G2047 NA non-coding downstream 38547 7206347 ~ 7206678 (+)
G2124 NA non-coding downstream 455011 7622811 ~ 7623261 (+)
G2125 NA non-coding downstream 540397 7708197 ~ 7745912 (+)
G2174 NA non-coding downstream 709933 7877733 ~ 7879526 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 607796 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 747452 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 1459063 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 1885258 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 1918059 5171375 ~ 5244187 (+)
G2304 NA other downstream 1392266 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 1564923 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 1776661 8944461 ~ 8957392 (+)
G2509 NA other downstream 2464065 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 2466293 9634093 ~ 9743491 (+)

Expression


Co-expression Network