LOC111197033


Basic Information

Item Value
gene id LOC111197033
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 12989585 ~ 12992123 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002652330.1
TGTTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGACATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTTAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataa
>XR_002652336.1
TATTGTAACTACCGTTAGCTAACTGGCTGTTTCAGCTCTCGGTGAAACGCGATCTTATTACTGAACTACAGCGTGGTttaaaagctgctgctgattgagaaaaacacacccTGTGCTGGGAGAGAAGGTCGTGAATCAGCTCTTAAACGgcgctgggtgtttgttttgtttctgaacaAGCAGGTGACTCTGCAACTGGATTTTATAAAGATATGAGAAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGACATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTTAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002652330.1 False 426 lncRNA 0.50 3 12990819 12992123
XR_002652336.1 True 617 lncRNA 0.46 3 12989585 12992123

Neighbor

gene id symbol gene type direction distance location
trappc4 trappc4,LOC107561742,LOC106612982 coding upstream 196282 12788901 ~ 12793303 (+)
sacs sacs,LOC107670382,LOC107724954 coding upstream 235685 12708209 ~ 12753900 (+)
mipep mipep,LOC107724959,LOC106581117 coding upstream 320816 12641165 ~ 12668769 (+)
LOC103047626 LOC103047626,LOC108426971 coding upstream 351326 12623464 ~ 12638259 (+)
LOC103046499 cadm2,cadm2b,LOC103046499,LOC108426969 coding upstream 387049 12288119 ~ 12602536 (+)
LOC103023132 LOC108426979,LOC108278227,LOC107567275 coding downstream 11414 13003537 ~ 13028805 (+)
LOC103023447 LOC108426981,LOC108278228,LOC107380297,LOC103474627,LOC102221837,LOC107746191 coding downstream 42357 13034480 ~ 13042611 (+)
LOC103022831 rab4b,LOC103022831,LOC108426982,LOC107567272,LOC107592649,LOC103378089,LOC107699834,LOC100706225 coding downstream 132659 13124782 ~ 13150184 (+)
arhgap35 arhgap35,LOC107670284,LOC107726507,LOC107699836,LOC107574404 coding downstream 193998 13186121 ~ 13330297 (+)
npas1 npas1 coding downstream 391854 13383977 ~ 13455473 (+)
G3232 NA non-coding upstream 268745 12714618 ~ 12720840 (+)
G3205 NA non-coding upstream 331278 12577080 ~ 12658307 (+)
G3179 NA non-coding upstream 736973 12246977 ~ 12252612 (+)
G3129 gbe1 non-coding upstream 880549 12106391 ~ 12109036 (+)
LOC111196183 NA non-coding upstream 1031120 11958075 ~ 11958465 (+)
G3323 NA non-coding downstream 6922 12999045 ~ 12999446 (+)
G3342 ap2s1 non-coding downstream 83474 13075597 ~ 13205546 (+)
G3377 tmem160 non-coding downstream 470972 13463095 ~ 13464950 (+)
LOC111188402 NA non-coding downstream 475550 13467673 ~ 13492977 (+)
G3381 NA non-coding downstream 489926 13482049 ~ 13485913 (+)
G3313 sept5b,LOC108425237 other upstream 5316 12982625 ~ 12984269 (+)
G3096 NA other upstream 1062335 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 1565134 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 1700739 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 1710408 11258446 ~ 11279177 (+)
LOC103035587 NA other downstream 1225684 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 1452435 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 1848170 14840293 ~ 14845626 (+)
G3736 NA other downstream 1969050 14961173 ~ 14963583 (+)
G3790 NA other downstream 2046432 15038555 ~ 15038914 (+)

Expression


Co-expression Network