trnae-uuc_1


Basic Information

Item Value
gene id trnae-uuc_1
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15046313 ~ 15046384 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnae-uuc_1
TCCCATATGGTCTAACGCGTAGGATTTCTGGCTTTCATCCAGACGGTctgggttcgaatcccggtaTGGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnae-uuc_1 True 72 tRNA 0.53 1 15046313 15046384

Neighbor

gene id symbol gene type direction distance location
LOC103047124 ksr1 coding upstream 12654 14972989 ~ 15033659 (+)
wsb1 wsb1,LOC107756317,LOC107587373,LOC107682796,LOC107746651 coding upstream 90969 14940680 ~ 14955344 (+)
LOC103046311 cuedc1,cuedc1b,LOC107672109,LOC107587359,LOC107757269 coding upstream 107479 14906783 ~ 14938834 (+)
LOC103046009 vezf1b,LOC108425912,LOC107756309,LOC107587351,LOC107682824,LOC107672112,LOC108435808 coding upstream 142816 14887299 ~ 14903497 (+)
LOC103045400 zgc:171927,LOC108425914,LOC107672095,LOC107588334,LOC108278279,LOC107683438,LOC107592930,LOC107757416 coding upstream 165681 14875553 ~ 14880632 (+)
LOC103021895 NA coding downstream 5090 15051474 ~ 15066217 (+)
akap1 akap1b,akap1 coding downstream 121076 15167460 ~ 15186395 (+)
LOC103023867 msi2b,msi2,LOC108425902,LOC107587484,LOC107682662,LOC108277875,LOC108435815,LOC105028669,LOC106603292 coding downstream 165273 15211657 ~ 15617787 (+)
LOC103029544 NA coding downstream 663096 15709480 ~ 15729311 (+)
LOC111192347 NA coding downstream 685095 15731479 ~ 15774952 (+)
G3788 NA non-coding upstream 9731 15035942 ~ 15036582 (+)
G3787 NA non-coding upstream 11126 15034766 ~ 15035187 (+)
G3648 eml2,LOC108277999 non-coding upstream 452254 14592933 ~ 14594059 (+)
G3575 NA non-coding upstream 533524 14511140 ~ 14512789 (+)
G3561 blmh,LOC107743628 non-coding upstream 610732 14414289 ~ 14435581 (+)
G3794 NA non-coding downstream 23046 15069430 ~ 15069802 (+)
G3800 NA non-coding downstream 74350 15120734 ~ 15134707 (+)
G3816 NA non-coding downstream 209073 15255457 ~ 15255899 (+)
G3825 NA non-coding downstream 242210 15288594 ~ 15290389 (+)
G3840 NA non-coding downstream 328247 15374631 ~ 15375643 (+)
G3790 NA other upstream 7399 15038555 ~ 15038914 (+)
G3736 NA other upstream 82730 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 200687 14840293 ~ 14845626 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 541298 14444558 ~ 14505015 (+)
LOC103035587 NA other upstream 801933 14217807 ~ 14244380 (+)
LOC103023550 nf1 other downstream 26456 15072840 ~ 15162956 (+)
LOC103040601 NA other downstream 735254 15781638 ~ 15826103 (+)
G4221 NA other downstream 1496558 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 1572662 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 2963794 18010178 ~ 18012103 (+)

Expression


Co-expression Network