trnaw-cca


Basic Information

Item Value
gene id trnaw-cca
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18401054 ~ 18401125 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnaw-cca
GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCGGGGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaw-cca True 72 tRNA 0.58 1 18401054 18401125

Neighbor

gene id symbol gene type direction distance location
LOC103034176 LOC108443019,LOC107663551,LOC107572208,LOC107557657,LOC107679443,LOC108277854 coding upstream 916 18389428 ~ 18400138 (+)
LOC103036794 map4k1,LOC108443018,LOC107757316,LOC107679433,LOC101883459,LOC104956018 coding upstream 14735 18332339 ~ 18386319 (+)
LOC103033229 psa6,LOC103033229,LOC106612618,LOC105026880,LOC106580837 coding upstream 120025 18274825 ~ 18281029 (+)
LOC103032687 gmfg,LOC103032687,LOC108277844,LOC107757325,LOC107679065,LOC107090391 coding upstream 144711 18250923 ~ 18256343 (+)
sidt2 sidt2 coding upstream 234377 18138024 ~ 18166677 (+)
trnag-ucc NA coding downstream 2580 18403705 ~ 18403776 (+)
LOC103035466 NA coding downstream 85881 18487006 ~ 18499131 (+)
fat3 fat3,fat3a,LOC107564369 coding downstream 265754 18666879 ~ 18870819 (+)
LOC103038796 mtnr1ba,LOC108413652,LOC107745177,LOC107585812,LOC107705472,LOC107669925 coding downstream 504521 18905646 ~ 18929820 (+)
LOC103030891 LOC108278224,LOC107558831,LOC107705626 coding downstream 667338 19068463 ~ 19101318 (+)
G4591 NA non-coding upstream 73047 18314554 ~ 18328007 (+)
G4582 paf1 non-coding upstream 94802 18258571 ~ 18306252 (+)
G4587 NA non-coding upstream 94905 18305358 ~ 18306149 (+)
G4589 crx,LOC108443020,LOC107395012,LOC106935423,LOC106914190,LOC103155943,LOC107094494 non-coding upstream 98906 18298516 ~ 18302148 (+)
G4542 NA non-coding upstream 120441 18212156 ~ 18280613 (+)
G4608 NA non-coding downstream 315836 18716961 ~ 18717640 (+)
G4611 NA non-coding downstream 355635 18756760 ~ 18758132 (+)
G4601 NA non-coding downstream 376878 18778003 ~ 18778514 (+)
G4614 NA non-coding downstream 405399 18806524 ~ 18806901 (+)
G4600 NA non-coding downstream 438841 18839966 ~ 18875470 (+)
G4550 sik3 other upstream 327391 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 388951 18010178 ~ 18012103 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 1777985 16619046 ~ 16623069 (+)
G4221 NA other upstream 1855200 16542942 ~ 16545854 (+)
LOC103040601 NA other upstream 2574951 15781638 ~ 15826103 (+)
G4612 NA other downstream 358250 18759375 ~ 18759858 (+)
G4775 LOC108411134 other downstream 759606 19160731 ~ 19165631 (+)
LOC107197594 NA other downstream 2148066 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 2157398 20558523 ~ 20582874 (+)
G5026 NA other downstream 2582582 20983707 ~ 20999200 (+)

Expression


Co-expression Network