G95949


Basic Information

Item Value
gene id G95949
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 298967 ~ 303210 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU129262
gatttaaATCATGTGACGAAAATCTGTCAAAATACAATCCAGATGCTATTTGCATGAAGGGACCAGTAGTAAACAGGGTCAAAACAGTTGTTTCTCCAGATGAGCGCTGTAAAGGTCAGTCaaagtaaaagcaaaaacaacaacaaaaaactagAAGATTTTAGTCACGCTACAAAAGCACGTTAcattaaaatgtacacaaaaaaaaattaacactgctTGTAATCAAGTCTGAATGACAGAACAGTTTAAATTCGTACCCACAGATTTTGTGCAAACATGTTATTTAGCTACTAACTGTAAAACAAGACATTAGATCCTGGCAACACATACCCTTTGGTCTGTTACAATGCCACTTTGTACACCAGCagcctgtttattattatttcaggtCCATATGCAACGTTGCATAGTTCTCTAAAGACAAAATTCCGCAGAGATGTACACAAGCGAATTGGGCTTGGACTTGAAGGCCTCAGTGCCACGACTCCGCTCACCTCGACTTTGGGTGCAGGCAACTTGGGACGTGAAAAATTTTAATAATGGAAAACAGAAGCAGTGTCTTTGAGACTGGTATGCAGATTGCATGTGTCCTTTGCAGGTTCACTAAGGCAGTTTACGAGTTCAAAGCATACCAATATGTTAAGAAGGGCCACGTAGGCTCTCTTTTCCTTGCTATCGGTAGATTGTCTGTTTAGTCCTTAGGTTTTAAAAGACAGCTTGCCAGTGTCGTTCTCGTTTTACAGCGTTGTATAGTGCAAATTTGAGATAATCATCAGCTTCTTCTATGCTAGACATCTCTAGCCTCCTTTACTGCAGGAAGTCTCAGCTCGAATGGCAGCTCTGTGTCTCTTCCTCCTTTTAAACATGTAGCAACACTGGCACCAGATTTCATCAGCATTCAGTACGGTATAACAACACATggctcttttttgtttgttttttttgttttgagtcCACCTGCATATGGAGAAAGTTTGTGGAGAACATACAAtgacatcaatcaatcaacagCATTCATCCATTTTGACATCCAATGACATCTTCTGTCATTGTGAAAAAATGACATTGATCTTTCAATCTTTGTTAGtaggcctatatatatatatgtatgtatgtatgtatgtataatacagcatgtgtgtgtgtgtgcttgagcACTGTTGAGGGTAGAACAGGAAGGAGAGAAGCAGCAGAAACGGCTCTGAAGAGCCCTGGGGATGTGCGGCCTTGCTGGACCAGAGCTGTTCCAGTGTATTCTGAAGTAGAAAAGGAAAACATTCACATTGAGATTGTTGAGGTTGCTGATGACAGTGGTTTCTCGCTATGAGAATGCCCACTGTATGGACGGCCCTGCTGTTATGTCTTATCTTCCTGAACCACTCAAGAGTTAGAGTAAGCACTCCAGTAAATACCCTGGTCTATTActgtaaaatagtaaataagaGTAAAATGAAGGCTAATATAGAAAAACAGCAGTGTCCAGCAGTACATATCTGTTTGACTAACGATAAATCTCTGCCCCTGAACTGACAGAGACAAACTAGGGCCTGGATTTACTAAAGCAAGTAGCTAACATGTTTAGCAATTAAAGTAACCAACATCTGAGTTATGGCAATTATCACTTTCACACAAGTTACATGTCATTGCAGTCACACAAAAACCTTCATCTCTATTTTTGCTctcataatattttttactcataatttacttttttttaaacactgcattGTTTCATATAGGACCGTCCTCcatataattaatgttttatggatatgaaatatgaaataaagcATTGAGCATAATTCATCATGTCTGGCATTTAAGGAAAACTTATTTTACTGAAAGGGCCAGGACAGTTATGCTAGCTGGGCtaacttagcattagcatttgttcATTTACCAAGCTGTGTGTTCACTTTTCTGTGGATTgataatcattttaatttaatatagtgCTGTCAACATGCTGAGTGATGCATTTTGGGGCATTGAGGAATCAGAACAGAGTCATGAAGCCCTGTGTACATCTCCACTTCCTGTTTCTgacatttcaaattaaaagccctgGATTGGAAGACATTCTGAAGCAATAGCGGCAATTCATCAGCTGAATGAAAACAAATGTAGCAGTAACACTGCATTGTATTGCATTTTTCGCATTAAAATCCCAAAAATTTTCAGTTTGCCTCATAATCAGGTGcaacttatgtatgaattttatcagtcaggttgtaaggagcagtaaagccactacaCTTAAGTACAGCCTTATATTGGAGTcacagtgaagtttctccaggctgaagcagtaTTACCCAAGCTTTCCCATAAGAAGGAAATCATGGCTACACTCTTGTTCTTTACTATTGTCTCTCAAAATGCAcctaatgtatgaaaatagccaagaaaatagacgtttattaaaagtgcaccttatagtgcgcaatatacagtaaatcatCTATTTCATTGAAAGCAATGATTGCTAAAGTTGCTATGATGGAgaggtttttgtgtgacagcaatGGAACCTCTATACATGCTAGAAGCTGTAGGAAATCTGGCCCAAAACCTGCTTTTACGATTCAAACATATTTGCATGTGTAATTCACATCAATCAATGTCACAATGTCCAGCGGTCACAATTCAGTCAACAGAGTCCACTGAGGAAATGCGGAAGATCTGTACACACAGTGGGACACTTTGGTCCACTGGAGTGAAAAGAGTTTGGagtgaaaaatgtatatttgctGCATCACGTAACCAAACATAACAGGTTAGGAAAAGCACTGAGGAAGTTGTGTATGCTAGGAGTGCAGAGCTCTTGTTGTTATGTTCTTTGTGAGATTAAGACGGAGGAAGTCATCAAATAATGATTCTCAATATTTTACGTTGCAGTTCGGATGATATTATCTTTTTGACAGATTCAAATTGGGCCTGTGTTGAGTCGATGGGAGTCCAAATCAAAAATGAATATCAGTCAAAAGAATCGCAATTATCATTTCTTGTCATTCTATAATTTCGCAGCCcttctttgatttgtttttttagcagCATCGTCACATCATGCTTTTCCTGTAATTATTTTGCTGCAAGTTCTTCAGTTTTCCACTGGTAGAGGAGCTCAGTGGGGCAGATGAGGCTGAGTCCAGCTGCCTGCAAAGCACTCTAAGCTCCTTCACCTCCTCCAGGACATCCCGGGCCTGACCCCAGGTAGACGCTGCTTCCTccagcagccgctccacctccGCCTTGCTGTTGCTATGGTCTTTCCCTTTGCTCTGCCCAGTACTCCGCACTTCAGTCAGCAGTTCCTGTGTTCTCTCCAGCTTCTTGGAGATAAGATCCTGCAGGTTGCCAATGGACTGGGCAGGTGCAGACATGGAGCAGTGGGGAATAGGACTCTTTGTGGCCCGTGTGTCTGAGTGAGACAGGATCTCGTCCATGGAGGCGCAGCGGTTCTTCTCGGACCCGTTGAGCTTTTTTCCAGTCTTGGGTGTTCGGTTTTGGCTGTCTGAGCCAGACCAGTCCCAGGCGCTCTCGCTCTTGCGTGGTAGGCTCTGAGATTTGACATTGGACTCAGTGCCAGGTGACAGTTTGCAGCTGTCCACACCTGAGTTTGCAGTGAGATGGAACTTCTTGTCAGTGGTGTCCTTGCCACTAGATGCCGGCACATCTTCCTCCTGAATAAGGTCTAGGGTCAGCATACCATCTGACGACGATGTTGAGGCCTGAAATGcacaaaagatttttttttttattaattgaggCTTCAGTGGTGAGGTGAATTAAaggaat

Function

NR:

description
PREDICTED: lysocardiolipin acyltransferase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129262 True 3801 lncRNA 0.41 3 298967 303210

Neighbor

gene id symbol gene type direction distance location
cep162 cep162 coding upstream 74172 163671 ~ 224795 (+)
LOC103039326 LOC108429160 coding downstream 146541 449751 ~ 460182 (+)
LOC103038500 c1ql1,LOC108429188,LOC107677187,LOC107667184,LOC107554477,LOC107599703,LOC107717612 coding downstream 177949 481159 ~ 495383 (+)
crhr1 crhr1,LOC108429163,LOC108273210,LOC107662410,LOC105890724,LOC108413653 coding downstream 293776 596986 ~ 636430 (+)
LOC103035972 LOC108269775,LOC100333227,LOC107747872,LOC100704930 coding downstream 349414 652624 ~ 682305 (+)
LOC103035662 tnnt1,LOC108429193 coding downstream 382640 685850 ~ 698734 (+)
G95962 NA non-coding upstream 23466 274506 ~ 275501 (+)
G95953 NA non-coding upstream 42677 252893 ~ 256290 (+)
G95950 NA non-coding upstream 65770 231507 ~ 233197 (+)
G95948 NA non-coding upstream 72042 225423 ~ 226925 (+)
G95943 NA non-coding upstream 145333 152501 ~ 153634 (+)
LOC103044902 NA non-coding downstream 106432 409642 ~ 420176 (+)
G96008 NA non-coding downstream 141203 444413 ~ 487537 (+)
G96018 NA non-coding downstream 222758 525968 ~ 526284 (+)
G96019 NA non-coding downstream 223265 526475 ~ 526761 (+)
G96020 NA non-coding downstream 224220 527430 ~ 527748 (+)
LOC103040575 ube2i,LOC107677193 other downstream 496014 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 3085841 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 3561780 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 4662260 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 5504358 5807568 ~ 5850530 (+)

Expression


Co-expression Network