LOC103044902


Basic Information

Item Value
gene id LOC103044902
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 409642 ~ 420176 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU129343
aaaaatgttgtgaaatgtctaattaaggctttattaaataaagaataaaatcttTATTAAACTCCTATTTGTTCCTTGCAATACAATGTTATTTCACATTATTCACGATACTAAAGTGATTCTTTTTCAGTAATTGTTGTAATGTGTTAAATAGATAACAGAACTTCTCAGCTCCACAGAGATGTCCATTTAGCTGAAAATGGAACATTTAAAATAGACGCTGACCACAATGTCACTTACGAAGATCAGGAGAGTTTCCAGGATCAGGAGAAATTCCACTTCCACTGGAAGTGTAATGAAGATCTGCTGATGCTGTATGGAGAATACTGCCTGAACATCACATTTCATACAGGCATGATGGAGCTGGGAGAGAGCAACTGGTGTGACTGGGACATGGTGATCAGACATTATAACTTCCTGACACATTGTTTGGAGTTATCTGCTGATGAGGCACGCTGCTTCTACCCAAGCCCTGTTATACACAAGCTGTTTCTGGATGTTCATCAGC
>TU129344
AAACTGTGCATGGTAGTGTGTTTGCATGTGCATGCCAGCTTGAGTGTAAAAGGTCACAAgaagctgtgtgagtgtgtaagtatTCTGTCTAAAGGCTAAGCTCAGTCTAACTGTCACTTTCAGAGAGTTTCCAGGATCAGGAGAAATTCCACTTCCACTGGAAGTGTAATGAAGATCTGCTGATGCTGTATGGAGAATACTGCCTGAACATCACATTTCATACAGGCATGATGGAGCTGGGAGAGAGCAACTGGTGTGACTGGGACATGGTGATCAGACATTATAACTTCCTGACACATTGTTTGGAGTTATCTGCTGATGAGGCACGCTGCTTCTACCCAAGCCCTGTTATACACAAGCTGTTTCTGGATGTTCATCAGC
>XR_002650506.1
TCACATTATTCACGATACTAAAGTGATTCTTTTTCAGTAATTGTTGTAATGTGTTAAATAGATAACAGAACTTCTCAGCTCCACAGAGATGTCCATTTAGCTGAAAATGGAACATTTAAAATAGAAGACGCTGACCACAATGTCACTTACGAAGATCAGGAGAGTTTCCAGGATCAGGAGAAATTCCACTTCCACTGGAAGTGTAATGAAGATCTGCTGATGCTGTATGGAGAATACTGCCTGAACATCACATTTCATACAGGCATGATGGAGCTGGGAGAGAGCAACTGGTGTGACTGGGACATGGTGATCAGACATTATAACTTCCTGACACATTGTTTGGAGTTATCTGCTGATGAGGCACGCTGCTTCTACCCAAGCCCTGTTATACACAAGCTGTTTCTGGATGTTCATCAGCAGTACTTCAGCTCCTGCAGCAAGCAGTGAAGGAAGAGGAGGCTCCGGAGAGTGTGGTCATCATTCTCACCCTTCTGCCTGTCTGCATCATTCCCATTGCAGTCTATATGGTCATCAAAAGGAGTAATGTTAAATAGTGAGAAACCCTCTCACAACCaaacaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129343 False 508 lncRNA 0.38 4 409642 420012
TU129344 False 381 lncRNA 0.45 2 413699 420012
XR_002650506.1 True 582 lncRNA 0.43 4 409735 420176

Neighbor

gene id symbol gene type direction distance location
cep162 cep162 coding upstream 184847 163671 ~ 224795 (+)
LOC103039326 LOC108429160 coding downstream 29575 449751 ~ 460182 (+)
LOC103038500 c1ql1,LOC108429188,LOC107677187,LOC107667184,LOC107554477,LOC107599703,LOC107717612 coding downstream 60983 481159 ~ 495383 (+)
crhr1 crhr1,LOC108429163,LOC108273210,LOC107662410,LOC105890724,LOC108413653 coding downstream 176810 596986 ~ 636430 (+)
LOC103035972 LOC108269775,LOC100333227,LOC107747872,LOC100704930 coding downstream 232448 652624 ~ 682305 (+)
LOC103035662 tnnt1,LOC108429193 coding downstream 265674 685850 ~ 698734 (+)
G95961 NA non-coding upstream 56111 270113 ~ 353531 (+)
G95949 NA non-coding upstream 106432 298967 ~ 303210 (+)
G95962 NA non-coding upstream 134141 274506 ~ 275501 (+)
G95953 NA non-coding upstream 153352 252893 ~ 256290 (+)
G95950 NA non-coding upstream 176445 231507 ~ 233197 (+)
G96008 NA non-coding downstream 24237 444413 ~ 487537 (+)
G96018 NA non-coding downstream 105792 525968 ~ 526284 (+)
G96019 NA non-coding downstream 106299 526475 ~ 526761 (+)
G96020 NA non-coding downstream 107254 527430 ~ 527748 (+)
G96021 NA non-coding downstream 110508 530684 ~ 530965 (+)
LOC103040575 ube2i,LOC107677193 other downstream 379048 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 2968875 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 3444814 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 4545294 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 5387392 5807568 ~ 5850530 (+)

Expression


Co-expression Network