G96116 (gnptg)


Basic Information

Item Value
gene id G96116
gene name gnptg
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 736741 ~ 743739 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU129490
GCATGCCAgcacttttatttaataaaaacaaaattaccataacttaaaatctgaaataaaaccaaaataaagtCATTTTCTTTCGATTGGGATGTAAGAAGTCACTGTTCAGCATCTTGCTAAACGTCTGCAACGATTCCAGTGTCGCCACGAAGATGCTGGTCCTGCAGCACTGAGGGCCGAGAGGTCAGTGGTCGTGGGGTCAATGGGGTTTCTGGCCGGCCAGGCTCTGCTTCATATGAAATGTTGTGCTGGGTGAGCAGAGAGCGCAGCCGCTCAATTTCAGCATGCTGTTTGTCAAAGTCCTGTGTGCACTGCTCCAGGCTTTGGTGtcgtggagtgtgtgtgttttcttcttGTGTCTGTGCCTGAACTTTCTTCAGAAAGCCAGCTTCTTCAAACAGGTCCTTCAGCATCTTTTTGTAGCCCTGTTCAGTTATGAGTTCATCATACCGGGCCTGCTCAATCTCATCCCACTCCTTCTGCAGTTTTTCACTCAGCACAGGGTACACCAGGAGGGAATGTTTGTGACAGACTAGTGGCGTCTCAAACGTGAACGAGTACACACATGTCTGTGGTTCCGACACTCTTGCCAGTTTACTGCTGTTCCCACAAGTAAAGAggacttgGTCTGTCTGTTCTTGTTCCCACAGGAGTCTCCCTCTCTCATCCACATCACAGAGAACGTGTTGTTGTGGATCTCCCACTCATGCCAGATGcCCAAAATTCCACTGTAAGCGTTCCACCTGAAGCTCTGCTCATGCTGTGTCACGTTATGGAATGGACAGAACTCATACTTATACGTGGACTCGATGTAGCTGAAACATTTCCCGGCCAGTCTGGCCAGATGAGGAGGTCCAGACACTGGAGATGGTTTGACCCTGGCCTGCAGCCGGCTGCCCTGAGCCAGAAGGTGGCTGTTCAACCCGAATGTATTTGGTTCCTCTACAATCTTCATCTTCCCACCAGACACAAGCGACACCAGTAACGTCAGCCATGGCAGATATCGAGAAGCAAATATGCACGACATGACCTCAAAACTCTAAAATCTGCTGCAGAAATGAGCAAAAACGTTATACTGTTTCCTTGTGTTTATCCGAGACCGTCGCCATGATGCCGCCCCTGATCACATGACTCTGCAGAAGGACTCGGTC

Function

symbol description
gnptg Predicted to enable transferase activity. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in glycoproteinosis and mucolipidosis III gamma. Orthologous to human GNPTG (N-acetylglucosamine-1-phosphate transferase subunit gamma).

NR:

description
PREDICTED: protein piccolo-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129490 True 1154 lncRNA 0.49 10 736741 743739

Neighbor

gene id symbol gene type direction distance location
LOC103035039 NA coding upstream 5306 715242 ~ 731435 (+)
LOC103035662 tnnt1,LOC108429193 coding upstream 38007 685850 ~ 698734 (+)
LOC103035972 LOC108269775,LOC100333227,LOC107747872,LOC100704930 coding upstream 54436 652624 ~ 682305 (+)
crhr1 crhr1,LOC108429163,LOC108273210,LOC107662410,LOC105890724,LOC108413653 coding upstream 100311 596986 ~ 636430 (+)
LOC103038500 c1ql1,LOC108429188,LOC107677187,LOC107667184,LOC107554477,LOC107599703,LOC107717612 coding upstream 241358 481159 ~ 495383 (+)
tsr3 tsr3,LOC107717598,LOC107667183,LOC107747895,LOC107556684,LOC107677200 coding downstream 646 744385 ~ 750365 (+)
LOC103033547 pdpk1b,LOC108429196,LOC108264442,LOC107747865,LOC107667172,LOC107677174 coding downstream 9346 753085 ~ 776488 (+)
LOC111193407 LOC108429197,LOC107677189,LOC107599708,LOC107747868,LOC107717626,LOC107554503,LOC107719174,LOC107703376 coding downstream 34090 777829 ~ 795543 (+)
cog7 cog7,LOC107717425,LOC107747870 coding downstream 97129 840868 ~ 864588 (+)
LOC111193408 NA coding downstream 200134 943873 ~ 948585 (+)
G96073 NA non-coding upstream 150629 585905 ~ 586112 (+)
G96061 NA non-coding upstream 157910 578494 ~ 578831 (+)
LOC111193406 NA non-coding upstream 203672 531857 ~ 533069 (+)
G96021 NA non-coding upstream 205776 530684 ~ 530965 (+)
G96020 NA non-coding upstream 208993 527430 ~ 527748 (+)
G96124 NA non-coding downstream 65582 809321 ~ 809530 (+)
G96132 NA non-coding downstream 91743 835482 ~ 836102 (+)
G96281 NA non-coding downstream 597822 1341561 ~ 1391532 (+)
G96282 NA non-coding downstream 600298 1344037 ~ 1344448 (+)
G96286 NA non-coding downstream 621045 1364784 ~ 1456887 (+)
LOC103040575 ube2i,LOC107677193 other downstream 55485 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 2645312 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 3121251 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 4221731 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 5063829 5807568 ~ 5850530 (+)

Expression


Co-expression Network