G96132


Basic Information

Item Value
gene id G96132
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 835482 ~ 836102 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU129515
atctATTGTATGGTGGACTAACCACGcgttactaacacattaacatataacatatgaaatctattgtgtgacttgcgtagctcatgcttgaagcatttcgttcactgcatgaccctaactaacggtcatcaactcgactggtacactcGGTACGAGACTACATTTCTACAGAGGAGGCTTTTAGATCAAAGCGGCCTTCTGTGTGTGGGGGAACCTGCAGCGGCTTCAAAGAGGGGGGTgacgcacactcacacagatagtgccacgatgttccattctggaagaacacagtcaaggccaaacactagtggtccggtcagacacgtgaaacttgagtactaacacgtgaaattatgcatattaacatgagctaatcgttagcaacgcctcatcagcaggtttcacgtcatttggggtataaaacatggagtcagatcagacggggtcagaacttttactgggacggctgttaactgtcttgtatgtattggttctcctgaattcagtaataaatacttggtttgctttcaacttcactccacctgtctgcgactctatcaaaacgaacacgtaggggagttgtaccccggatgaGGGGTGGGTGTGGACCcatctttcatt

Function

NR:

description
PREDICTED: protein piccolo-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129515 True 621 lncRNA 0.46 1 835482 836102

Neighbor

gene id symbol gene type direction distance location
LOC111193407 LOC108429197,LOC107677189,LOC107599708,LOC107747868,LOC107717626,LOC107554503,LOC107719174,LOC107703376 coding upstream 39939 777829 ~ 795543 (+)
LOC103033547 pdpk1b,LOC108429196,LOC108264442,LOC107747865,LOC107667172,LOC107677174 coding upstream 58994 753085 ~ 776488 (+)
tsr3 tsr3,LOC107717598,LOC107667183,LOC107747895,LOC107556684,LOC107677200 coding upstream 85117 744385 ~ 750365 (+)
LOC103035039 NA coding upstream 104047 715242 ~ 731435 (+)
LOC103035662 tnnt1,LOC108429193 coding upstream 136748 685850 ~ 698734 (+)
cog7 cog7,LOC107717425,LOC107747870 coding downstream 4766 840868 ~ 864588 (+)
LOC111193408 NA coding downstream 107771 943873 ~ 948585 (+)
nlrc3 nlrc3 coding downstream 184032 1020134 ~ 1209397 (+)
wdr90 wdr90,LOC107677127 coding downstream 388074 1224176 ~ 1271502 (+)
rhot2 rhot2,LOC107677299,LOC107556678 coding downstream 441682 1277784 ~ 1302779 (+)
G96124 NA non-coding upstream 25952 809321 ~ 809530 (+)
G96116 gnptg non-coding upstream 91743 736741 ~ 743739 (+)
G96073 NA non-coding upstream 249370 585905 ~ 586112 (+)
G96061 NA non-coding upstream 256651 578494 ~ 578831 (+)
LOC111193406 NA non-coding upstream 302413 531857 ~ 533069 (+)
G96281 NA non-coding downstream 505459 1341561 ~ 1391532 (+)
G96282 NA non-coding downstream 507935 1344037 ~ 1344448 (+)
G96286 NA non-coding downstream 528682 1364784 ~ 1456887 (+)
G96273 NA non-coding downstream 546323 1382425 ~ 1421881 (+)
G96289 NA non-coding downstream 555906 1392008 ~ 1392358 (+)
LOC103040575 ube2i,LOC107677193 other upstream 26908 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 2552949 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 3028888 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 4129368 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 4971466 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 5444220 6280322 ~ 6382717 (+)

Expression


Co-expression Network