G96204 (pdpk1b,pdpk1,LOC108429196,LOC108264442,LOC107747865,LOC107667172)



Basic Information


Item Value
gene id G96204
gene name pdpk1b,pdpk1,LOC108429196,LOC108264442,LOC107747865,LOC107667172
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 753008 ~ 760508 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU129600
GCACAGTAATGTTTCTCCAAGTAGTTCTTAGGGGCCCCGAGGTAGTCCAGatttatacacactgtacatggTAAGAGTAATGATCTGAAGGTTTCTCTcatgcagatgttttttttctgcagttcaTCTTTGCCATTATAACTACCCTGACTCATATAAAAACCAAGCTAAACAGTAAGGTGTTCTTTACCAACGTTATGATATCACTGACAAGCTGTGGCAGCGCTGGTGTTGAGCATTTGAGCGTAAAGGATACAGAGCTTCTCCTCATCCTGGAAGGTGAAGTACAGCTTGACGAAGAAAGGGTGATCCAGGATTGACAtcacatccctctctctcttcacgtATTGCGCCTTGTTCTCCTTCATTATGTGGCGCTTTTCCAGGATCTTAATTGCATATTCTTTCCCCGTTGAATGTTCTTTCGCAAGGACAACCGTAGAGAAGGAGCCCTCTCCCAATATTTTGCCAAATTTAAAATCCTCAGGCCTCTTCTTGCGTGGCTGAGCTGGCTGGGAGGGAGGGGCCTGGCCTTCCATGCTGGTGCCGTGAAGACGAGGCGTTTCCTGCTGACCTCTTACCATGGATGGACAGGGGCAGAGACCAGAGGAGTGGATGGGTACAACatcataGATCTGACTTGTGGCTCGTGCCATGGAAGTTTTCCGCGAGTATTTTATTTGGATTAAATAATTACGGAGCCCGTGGTCATGGCCGCCTCTGCGCCTTCATCTTACGTCCGTGACGTCATTCCACAACAATGTTGTTACCGCAGTCGCGAGGGGAGCGGGAGCCTCGACGCGCCCTCGCGCGGCGCAACTCCGCCATTCAAAAATTCGAAC

Function


symbol description
pdpk1b Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to several human genes including PDPK1 (3-phosphoinositide dependent protein kinase 1).
pdpk1 Enables 3-phosphoinositide-dependent protein kinase activity; phospholipase activator activity; and phospholipase binding activity. Involved in several processes, including cell surface receptor signaling pathway; regulation of protein kinase activity; and regulation of signal transduction. Acts upstream of or within intracellular signal transduction. Located in cell projection; cytosol; and plasma membrane. Implicated in prostate cancer. Biomarker of lung non-small cell carcinoma.

NR:

description
PREDICTED: 3-phosphoinositide-dependent protein kinase 1-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU129600 True 842 lncRNA 0.49 4 753008 760508
Loading

Neighbor


gene id symbol gene type direction distance location
gnptg gnptg coding downstream 9278 736736 ~ 743730 (-)
dnaaf3 NA coding downstream 41897 698723 ~ 711111 (-)
LOC111193396 NA coding downstream 176452 575511 ~ 576556 (-)
LOC103037419 LOC108429189,LOC108272415 coding downstream 179718 551438 ~ 573290 (-)
dcakd dcakd,LOC107667188,LOC107747896,LOC107717668,LOC107554516 coding downstream 207989 536446 ~ 545019 (-)
il4r NA coding upstream 51600 812108 ~ 827863 (-)
LOC103030489 kcnc3b,LOC103030489,LOC108429201,LOC107667167,LOC103358372 coding upstream 118386 878894 ~ 969646 (-)
cluap1 cluap1,LOC107667210,LOC107718203,LOC107747891 coding upstream 449000 1209508 ~ 1223065 (-)
LOC103026561 LOC103026561,LOC108429165,LOC107554213,LOC107747860,LOC107667231,LOC107677303,LOC107556681,LOC107717783 coding upstream 549035 1309543 ~ 1311140 (-)
LOC103027648 LOC108429212 coding upstream 662271 1422779 ~ 1439828 (-)
G96171 NA non-coding downstream 29530 637382 ~ 723478 (-)
G96081 NA non-coding downstream 173849 578492 ~ 579159 (-)
G96058 NA non-coding downstream 225247 527434 ~ 527761 (-)
G96057 NA non-coding downstream 226247 526407 ~ 526761 (-)
G96056 NA non-coding downstream 226725 525949 ~ 526283 (-)
G96202 pdpk1b,LOC108429196,LOC108264442,LOC107677174,LOC107718133,LOC107554309 non-coding upstream 9578 770086 ~ 776473 (-)
G96213 NA non-coding upstream 75020 835528 ~ 836117 (-)
G96257 wdr90,LOC107747862,LOC107554221 non-coding upstream 463656 1224164 ~ 1226850 (-)
G96355 NA non-coding upstream 517235 1277743 ~ 1281993 (-)
G96358 rhot2 non-coding upstream 527535 1288043 ~ 1291525 (-)
LOC103043490 NA other downstream 487414 252340 ~ 265594 (-)
carmil1 carmil1 other upstream 821499 1582007 ~ 1778100 (-)
LOC103031019 NA other upstream 1051193 1811701 ~ 1815034 (-)
mboat1 mboat1 other upstream 3118188 3878696 ~ 3899248 (-)
LOC107197182 NA other upstream 3389495 4150003 ~ 4178426 (-)
dek dek other upstream 3683721 4444229 ~ 4453002 (-)

Expression


G96204(pdpk1b,pdpk1,LOC108429196,LOC108264442,LOC107747865,LOC107667172) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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G96204(pdpk1b,pdpk1,LOC108429196,LOC108264442,LOC107747865,LOC107667172) Expression in each Bioproject

Bar chart with 5 bars.
G96204(pdpk1b,pdpk1,LOC108429196,LOC108264442,LOC107747865,LOC107667172) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.

Co-expression Network