G96257 (wdr90,LOC107747862,LOC107554221)



Basic Information


Item Value
gene id G96257
gene name wdr90,LOC107747862,LOC107554221
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1224164 ~ 1226850 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU129673
ACTGGGGCTGGGTCTGAACAGCAGGTAGAGGTAACGGCCTGTGAGACCCAGTGATTGGCTGCTGGTTCTGGGCAGGAGAATATAGTTGCTGGCTGGAATGGAACCGCGAATACGGAACACCGAACACTTCAGAGTCTTGTCCATGTAGGTTGTAACATCGCCTTCTTTGCTGGCCTTCCTCCATTCCTCCAATTTTAGGTGCTTAAAGACATTAACATAAGGATGTTGCCATGCTTTTGAGGACATTGTAAACAGACCGAGATTAGCAGATTGTAGATGGGTTGATATCAGCAGGCTAAAAGAACAGACGCTAGCGCTGAGTTAGCTCTAACTTTCACAGTtagcatatataaataaatatatctatttGTTTGTTGATGTGCTCCGTTCCAGGCCAGcgtcacattttaaactaaagtCCTTCATGTCTCAGAAAGCTTCATATCCTTCGCAGaagtttgtttgtgttgttaAAGTGGTtaaagtgctctctctctctctgcgctcCGGCTGCTCATGTTTTGTTGTCAGACTCAGGTCTCCTCCCGCTGCAGCAGCCGCCGCTTTCAAAC

Function


symbol description
wdr90 Predicted to be involved in cilium assembly. Predicted to be active in centriole. Orthologous to human WDR90 (WD repeat domain 90).

NR:

description
PREDICTED: WD repeat-containing protein 90 isoform X2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU129673 True 572 lncRNA 0.46 3 1224164 1226850
Loading

Neighbor


gene id symbol gene type direction distance location
cluap1 cluap1,LOC107667210,LOC107718203,LOC107747891 coding downstream 1099 1209508 ~ 1223065 (-)
LOC103030489 kcnc3b,LOC103030489,LOC108429201,LOC107667167,LOC103358372 coding downstream 254518 878894 ~ 969646 (-)
il4r NA coding downstream 396301 812108 ~ 827863 (-)
gnptg gnptg coding downstream 480434 736736 ~ 743730 (-)
dnaaf3 NA coding downstream 513053 698723 ~ 711111 (-)
LOC103026561 LOC103026561,LOC108429165,LOC107554213,LOC107747860,LOC107667231,LOC107677303,LOC107556681,LOC107717783 coding upstream 82693 1309543 ~ 1311140 (-)
LOC103027648 LOC108429212 coding upstream 195929 1422779 ~ 1439828 (-)
anks3 anks3,LOC107747856,LOC107717876 coding upstream 231600 1458450 ~ 1477019 (-)
c11h8orf33 LOC103028915 coding upstream 251676 1478526 ~ 1481753 (-)
c11h16orf91 NA coding upstream 260489 1487339 ~ 1490240 (-)
G96213 NA non-coding downstream 388047 835528 ~ 836117 (-)
G96205 ube2i,LOC107677193 non-coding downstream 415639 755884 ~ 808525 (-)
G96202 pdpk1b,LOC108429196,LOC108264442,LOC107677174,LOC107718133,LOC107554309 non-coding downstream 447691 770086 ~ 776473 (-)
G96204 pdpk1b,pdpk1,LOC108429196,LOC108264442,LOC107747865,LOC107667172 non-coding downstream 463656 753008 ~ 760508 (-)
G96171 NA non-coding downstream 500686 637382 ~ 723478 (-)
G96355 NA non-coding upstream 50893 1277743 ~ 1281993 (-)
G96358 rhot2 non-coding upstream 61193 1288043 ~ 1291525 (-)
G96407 H3F3A,h3f3b,LOC105909691,LOC107388308,LOC101073377,LOC107572204,LOC103395674,LOC101167724 non-coding upstream 207405 1434255 ~ 1486728 (-)
G96383 NA non-coding upstream 228120 1454970 ~ 1456856 (-)
G96446 NA non-coding upstream 559425 1786275 ~ 1786560 (-)
LOC103043490 NA other downstream 958570 252340 ~ 265594 (-)
carmil1 carmil1 other upstream 355157 1582007 ~ 1778100 (-)
LOC103031019 NA other upstream 584851 1811701 ~ 1815034 (-)
mboat1 mboat1 other upstream 2651846 3878696 ~ 3899248 (-)
LOC107197182 NA other upstream 2923153 4150003 ~ 4178426 (-)
dek dek other upstream 3217379 4444229 ~ 4453002 (-)

Expression


G96257(wdr90,LOC107747862,LOC107554221) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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G96257(wdr90,LOC107747862,LOC107554221) Expression in each Bioproject

Bar chart with 4 bars.
G96257(wdr90,LOC107747862,LOC107554221) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.

Co-expression Network