G96289


Basic Information

Item Value
gene id G96289
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1392008 ~ 1392358 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU129713
GACAAGCAAAGAAGAGCCAggctgaagtttgcaaaagatcaTAAGAATTGGACTATATAGGACTGGAGTAAGATCATTTTCTCAGATAAGTCCAATTTTTAGCTTTGCTCAACACCTGGCCATCAAATGTTTAGATGGAGACCTGCAGAAGTGTCTTGCACCCACTGTGAAATTTGGTGGAAAATCagtgatgatctggggatgTTTCGGCAAGGCTGGAATTATCCTGGACCAACACTTGCTTCCTTCTGCTCTGACAATATTCTCTGAGAACTGTTTCTTCCAGCAAAACAATGCTCA

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function
GO:0005515 protein binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function
GO:0098772 molecular function regulator molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129713 True 300 lncRNA 0.42 2 1392008 1392358

Neighbor

gene id symbol gene type direction distance location
rhot2 rhot2,LOC107677299,LOC107556678 coding upstream 89229 1277784 ~ 1302779 (+)
wdr90 wdr90,LOC107677127 coding upstream 120506 1224176 ~ 1271502 (+)
nlrc3 nlrc3 coding upstream 182611 1020134 ~ 1209397 (+)
LOC111193408 NA coding upstream 443423 943873 ~ 948585 (+)
cog7 cog7,LOC107717425,LOC107747870 coding upstream 527420 840868 ~ 864588 (+)
wdr24 wdr24,LOC107747855,LOC107717799,LOC107667227 coding downstream 47471 1439829 ~ 1455488 (+)
LOC103029750 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC101073377,LOC103395674,LOC101167724 coding downstream 90328 1482686 ~ 1486444 (+)
c11h7orf50 cunh7orf50 coding downstream 105753 1498111 ~ 1515737 (+)
colec10 NA coding downstream 495243 1887601 ~ 1905908 (+)
mal2 mal2,LOC107683116,LOC107757438 coding downstream 518747 1911105 ~ 1924151 (+)
G96281 NA non-coding upstream 476 1341561 ~ 1391532 (+)
G96282 NA non-coding upstream 47560 1344037 ~ 1344448 (+)
G96132 NA non-coding upstream 555906 835482 ~ 836102 (+)
G96124 NA non-coding upstream 582478 809321 ~ 809530 (+)
G96116 gnptg non-coding upstream 648269 736741 ~ 743739 (+)
G96291 NA non-coding downstream 33900 1426258 ~ 1429217 (+)
G96460 NA non-coding downstream 418031 1810389 ~ 1857895 (+)
G96517 taf2,LOC106594256 non-coding downstream 605513 1997871 ~ 2003611 (+)
G96520 taf2 non-coding downstream 619033 2011391 ~ 2014287 (+)
G96541 NA non-coding downstream 683028 2075386 ~ 2075954 (+)
LOC103040575 ube2i,LOC107677193 other upstream 583434 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 1996693 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 2472632 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 3573112 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 4415210 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 4887964 6280322 ~ 6382717 (+)

Expression


Co-expression Network