G96520 (taf2)


Basic Information

Item Value
gene id G96520
gene name taf2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 2011391 ~ 2014287 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU130005
CTTGGCCAGGCAGAAGCAGGCCTGCATGCGCACTTTGTAGAAGCACTGGTCTTGCTCCAGGATGTCGGTAAGGGCCAGGCGAGAGGCGGCGGTGGGGAATTTCTCCAGAGCTGAAATCGCCTCTTCCTGAGCCACCACATCCCGCTCGTAGCGCAGCTGGTACTGCCACATGAAGTCAGCCTGCTCAAACTCCACCTTCCGCAGAATGGCCATGTCTGGATCGATCCGAATCCAGAGCAGAGGAGAGTCCGAGTCCATGGCTGACAGGTCCATGTCGATTTCTTCGCCATTCATCagtgggatttttttcttcttattcCTCCTGCTTTTGGAGTGGCAGGGTATATCATGCTTCAGACTGTTCTCCTCAATCTGCAGAGTATGGTTAAAGGATCCATCCAGCTCCTGAACAGTCACTTTAATAGGGCcCACATATTTCTGGGTGCCAGAGGAGGTGTAGTCCTGGCGgatctccagctccagcacgtTTCTTTTCCTGTTAAAAGCAAAGCTGCCAAAGAACTTCACCACACCACTCTGGTCTACCCACTGCTTGATCAAAGGACCAATG

Function

symbol description
taf2 Predicted to enable chromatin binding activity and transcription cis-regulatory region binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TAF2 (TATA-box binding protein associated factor 2).

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130005 True 571 lncRNA 0.53 5 2011391 2014287

Neighbor

gene id symbol gene type direction distance location
nov NA coding upstream 56325 1950534 ~ 1955066 (+)
mal2 mal2,LOC107683116,LOC107757438 coding upstream 87240 1911105 ~ 1924151 (+)
colec10 NA coding upstream 105483 1887601 ~ 1905908 (+)
c11h7orf50 cunh7orf50 coding upstream 495654 1498111 ~ 1515737 (+)
LOC103029750 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC101073377,LOC103395674,LOC101167724 coding upstream 524947 1482686 ~ 1486444 (+)
LOC103032920 NA coding downstream 60321 2074608 ~ 2085398 (+)
prpf3 prpf3 coding downstream 96590 2110877 ~ 2121710 (+)
ice1 NA coding downstream 111996 2126283 ~ 2148738 (+)
LOC103036307 LOC106588695 coding downstream 137630 2151917 ~ 2167691 (+)
LOC103036916 adcy2a,LOC108429235,LOC108272199,LOC103367001 coding downstream 227883 2242170 ~ 2495068 (+)
G96517 taf2,LOC106594256 non-coding upstream 7780 1997871 ~ 2003611 (+)
G96460 NA non-coding upstream 153496 1810389 ~ 1857895 (+)
G96286 NA non-coding upstream 554504 1364784 ~ 1456887 (+)
G96541 NA non-coding downstream 61099 2075386 ~ 2075954 (+)
LOC111193411 NA non-coding downstream 210295 2224582 ~ 2227412 (+)
G96582 NA non-coding downstream 247752 2262039 ~ 2265095 (+)
G96601 NA non-coding downstream 439465 2453752 ~ 2454050 (+)
G96604 NA non-coding downstream 481082 2495369 ~ 2495929 (+)
LOC103040575 ube2i,LOC107677193 other upstream 1202817 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 1374764 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 1850703 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 2951183 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 3793281 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 4266035 6280322 ~ 6382717 (+)

Expression


Co-expression Network