G96541


Basic Information

Item Value
gene id G96541
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 2075386 ~ 2075954 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU130040
ATAAAGGTATCACATGTAGGTTAATGTTGGGTTTAGAAAAACCTAGAAACCTAGCCTGTTTTTGATAACAGCTAACTGTTAGTCTCAAGCCAATTAATATTTCTGAGAAATTCCAGCAAATTCCAGCAGTCAACAGTATGATCTCATACActagccacacacacactgacacacacacatacacctgaATTACAAACACAACACCAGCAGCATGACTGCTTTTTtactataaaagaaaaaagtgagtgtTAACTCACAGGATGTTACATAATACAGAGCTACATCATACATAATGATTTAATTGAGGAAAACAATCCTAGAGTGGAGCAGTCACACTCATACTCCCACCCACCACATCTGGTCTCCAAAAGGGcgaaatacaatacaataaaacacatgGTGTTGCTCAGGTGCGCATGGATGTTTTATCTGATATATGTGTCTGATATGAACAGGTATTCACACACATAAGTGTGTCACaaattgtaataattgtaataaacaaCAGTATTGTCTTCTTTTAAAACGGTTTTTATATTGATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130040 True 544 lncRNA 0.36 2 2075386 2075954

Neighbor

gene id symbol gene type direction distance location
nov NA coding upstream 120320 1950534 ~ 1955066 (+)
mal2 mal2,LOC107683116,LOC107757438 coding upstream 151235 1911105 ~ 1924151 (+)
colec10 NA coding upstream 169478 1887601 ~ 1905908 (+)
c11h7orf50 cunh7orf50 coding upstream 559649 1498111 ~ 1515737 (+)
LOC103029750 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC101073377,LOC103395674,LOC101167724 coding upstream 588942 1482686 ~ 1486444 (+)
prpf3 prpf3 coding downstream 34923 2110877 ~ 2121710 (+)
ice1 NA coding downstream 50329 2126283 ~ 2148738 (+)
LOC103036307 LOC106588695 coding downstream 75963 2151917 ~ 2167691 (+)
LOC103036916 adcy2a,LOC108429235,LOC108272199,LOC103367001 coding downstream 166216 2242170 ~ 2495068 (+)
LOC103037869 triob,LOC108429234,LOC107746974 coding downstream 660175 2736129 ~ 3006374 (+)
G96520 taf2 non-coding upstream 61099 2011391 ~ 2014287 (+)
G96517 taf2,LOC106594256 non-coding upstream 71775 1997871 ~ 2003611 (+)
G96460 NA non-coding upstream 217491 1810389 ~ 1857895 (+)
G96291 NA non-coding upstream 646169 1426258 ~ 1429217 (+)
G96273 NA non-coding upstream 653505 1382425 ~ 1421881 (+)
LOC111193411 NA non-coding downstream 148628 2224582 ~ 2227412 (+)
G96582 NA non-coding downstream 186085 2262039 ~ 2265095 (+)
G96601 NA non-coding downstream 377798 2453752 ~ 2454050 (+)
G96604 NA non-coding downstream 419415 2495369 ~ 2495929 (+)
G96609 NA non-coding downstream 425203 2501157 ~ 2503293 (+)
LOC103040575 ube2i,LOC107677193 other upstream 1266812 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 1313097 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 1789036 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 2889516 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 3731614 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 4204368 6280322 ~ 6382717 (+)

Expression


Co-expression Network