ddc (ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878)


Basic Information

Item Value
gene id ddc
gene name ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 3389051 ~ 3438726 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU130439
CTTGCGGATGTGGTGCTGGGTTTAGTCTGCTTCAGACTAAAGGGCTCTAATGAATTGAATGAAGCTCTGCTGAAGAAGATTAACAGTGCTCGGACGATTCACCTGGTGCCGTGTCAGCTGGCGGGCAGATTCGTGCTGCGTTTTGCAGTGTGCTCCCGGACAACGGAGTCACGGCACGTGCAGGAGGCCTGGGCCCACATCAGCAAGCTGGCCACCGAGCTGCTGCACCAGCCCTCACACTGATCTGCACACAATGATCACCATTCAGCTTCTTCATTCAGCGGCCATTCTGCTTATATAATGATCCAAAGAGGGgaattcagtcagtcagtagcTACAGTATGGGGTGATACAGTACATGTCCACCTTCTGTGATCTGAAAGCATTTATCATTAACTTTCTTTACCAAAGTTTAGGCTGAATAAAGCAGTTGTCCAGGTTTGACCACCCCACCATAAGCCTGACATGATTAAGTAGAATGACCACTGTGTGAATAAGATGATAATAATGATCGCACTGACCGCACTGTCTTATACTGACCGTCCTGCTGCTGCATTTCCATCCACTTCTCTCCAGTGTTTGTGTAttgtctgtttctgtgtgtctggtgtgtgtgtgtgtgtcatgtcCAGTGTGTCTTTATGAGATTTTTACACCTTGCATTTACTTCCATGTGGTCAAGATCCATCTTTCACCATCTGCATGTGTCGTCTGACTGAGTAATCCAGTCTGGGCTTATCTATGTAAAAACACAggtgttttaaaatattctatTCCTATCATTTAAATTTGTCCAGTAAGTGTAAACACATCTGGTGTACTTCTTTTTAGAttacaatccagatactagaTATATTAAACAAGACAAAAGGAAATAAGTGACAACCATATTTACCATACTTGTGCTGGGCACATATGGactaaacacacataaacactgcAGTGGGCAGCCATCTCTACAGCACCCATGGAGCAATGAGGAAACCCAGGTATTGCCAACAACAACACTGTCATTAATAACCCTGTGCTATAACCCTTAAGCCACTATTGCCCCATCTGACCTAAACAGATGCTAGTGGGGTCAGTGTGCACCCCGGGCATGTTTACATCAGGCTTTTCAGTAAAATCTAATTGTAATCCAACTCATGAAAATTCACGTAAATGCAAGGTGCAAACAACTTCTGTGTTGTCAAAGTAGATGTTGGTCTTTTTGGAACGTGTGACCATCCAAAACCGTCTATGTTTAGTCCCATGAAAATATGTGTGCTTGAATGTAAGTCTGTATTCACTGTTGAGCGACATATAAGTATATTTCACAGATATAaaaggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtttgtgtactATTGTTAATGAAATACAAAAGATGTACAGAaggtttattaaatattaaggcCTACATCATTACTCCCACTGCAGCATAAAGTACTGGAGCCTGAGTTTTTCTGCTTGCTTATGATTTACAGCTTACTAACATAACGTTTTAAACGAATCCGGGTTAGTGAAGCTTTGG
>XM_022674128.1
GGTGCGCTCAGCAGATAAAGACACGGGCTGCTCAGCTCCACTCCACTCTGCTCTGCTGtgagtgtgcgtgtgcgtgtttGATTGCATGTGTTTGCCTGTTGGTGACCCTGCAGAACAGTGTGTCCGTGTGTTGTAAGCAGTGAGGAGGAGGACGCCGCTTTTTGACAGATACTTTTCCTCTCCAGGTTTCAGGATGGACACAGCAGAATTCCGCAGGAGAGGGAAGGAGATGGTGGACTACGTGGCTGATTACCTGGAGAACATTGAGTCACGGCAGGTCTACCCTGATGTACAGCCAGGCTACTTGAGGACCCTCATACCGGAGGACGCTCCACAGGAGCCAGAGACGTATGAGGATGTGGTGAAGGACATTGAGAGGGTCATCATGCCAGGGGTCACTCACTGGCACAGCCCATACTTCTTTGCCTACTTCCCCACTGCCAACTCCTTTCCTGCACTACTGGCAGACATGCTGTCTGGAGCTATTGGCTGCATCGGCTTCTCATGGgctgCGAGTCCAGCCTGCACAGAGCTGGAGACAGTGATGCTGGACTGGCTGGGGAAGATGCTGAAGCTGCCTGAGGAGTTTCTAGCAGGCACAGAGGGTAAAGGAGGAGGCGTGATTCAGGGGACCGCTAGTGAAGCGACTCTGGTGGCACTCCTAGCTGCTCGTTCCAGAATCTTGAAGAGGATACTAAATGATGATCCTGAGAAGCAAGAAGCCAACATCATCTCCAGACTAGTCGCCTATTCCTCTGATCAGGCTCATTCATCAGTTGAGAGAGCAGCTCTAATCGGAGGcgtgaaaatgaagaaaattcCCACAGACTGCAAGTTTGCTGTGCGGGGAGAGGCGTTCCAAAAAATCCTGGAAGAGGACAAAGCAGCAGGACTCATCCCCTTCTATTTTTGTGCCACCTTGGGGACAACGCCATCGTGTGCATTCGACCGCATCACAGAGATTGGGCCCATATGTAATGCTGAGCAGTTATGGTTGCACATTGACGCTGCTTACGCAGGAAGTGCGTTCATCTGCCCAGAGTTTCGACCTCTTCTGGACGGCGTGGAGTTTGCAGACTCCTTCAACTTTAACCCTCACAAATGGATGCTAGTGAACTTTGACTGCTCCACAATGTGGGTGAAGAACAGATCGGATATCATTGGGGCATTTAAGATGGACCCACTTTACTTGAAGCACGACCATCAAGAATCAGGACTCGTGACTGATTACAGACACTGGCAGATTCCTCTGGGTCGGAGGTTTCGCTCACTGAAGATGTGGTTTGTGTTCCGCATGTACGGACTCAGAGGCCTGCAGGAGCACATCCGCAAGCATGTATCGTTGGCTAAGGAGTTTGAGGATTTCGGGTTGTTAGGTGCGACGTGATCACTTGCGGATGTGGTGCTGGGTTTAGTCTGCTTCAGACTAAAGGGCTCTAATGAATTGAATGAAGCTCTGCTGAAGAAGATTAACAGTGCTCGGACGATTCACCTGGTGCCGTGTCAGCTGGCGGGCAGATTCGTGCTGCGTTTTGCAGTGTGCTCCCGGACAACGGAGTCACGGCACGTGCAGGAGGCCTGGGCCCACATCAGCAAGCTGGCCACCGAGCTGCTGCACCAGCCCTCACACTGATCTGCACACAATGATCACCATTCAGCTTCTTCATTCAGCGGCCATTCTGCTTATATAATGATCCAAAGAGGGgaattcagtcagtcagtagcTACAGTATGGGGTGATACAGTACATGTCCACCTTCTGTGATCTGAAAGCATTTATCATTAACTTTCTTTACCAAAGTTTAGGCTGAATAAAGCAGTTGTCCAGGTTTGACCACCCCACCATAAGCCTGACATGATTAAGTAGAATGACCACTGTGTGAATAAGATGATAATAATGATCGCACTGACCGCACTGTCTTATACTGACCGTCCTGCTGCTGCATTTCCATCCACTTCTCTCCAGTGTTTGTGTAttgtctgtttctgtgtgtctggtgtgtgtgtgtgtgtcatgtcCAGTGTGTCTTTATGAGATTTTTACACCTTGCATTTACTTCCATGTGGTCAAGATCCATCTTTCACCATCTGCATGTGTCGTCTGACTGAGTAATCCAGTCTGGGCTTATCTATGTAAAAACACAggtgttttaaaatattctatTCCTATCATTTAAATTTGTCCAGTAAGTGTAAACACATCTGGTGTACTTCTTTTTAGAttacaatccagatactagaTATATTAAACAAGACAAAAGGAAATAAGTGACAACCATATTTACCATACTTGTGCTGGGCACATATGGactaaacacacataaacactgcAGTGGGCAGCCATCTCTACAGCACCCATGGAGCAATGAGGAAACCCAGGTATTGCCAACAACAACACTGTCATTAATAACCCTGTGCTATAACCCTTAAGCCACTATTGCCCCATCTGACCTAAACAGATGCTAGTGGGGTCAGTGTGCACCCCGGGCATGTTTACATCAGGCTTTTCAGTAAAATCTAATTGTAATCCAACTCATGAAAATTCACGTAAATGCAAGGTGCAAACAACTTCTGTGTTGTCAAAGTAGATGTTGGTCTTTTTGGAACGTGTGACCATCCAAAACCGTCTATGTTTAGTCCCATGAAAATATGTGTGCTTGAATGTAAGTCTGTATTCACTGTTGAGCGACATATAAGTATATTTCACAGATATAaaaggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtttgtgtactATTGTTAATGAAATACAAAAGATGTACAGAaggtttattaaatattaaggcCTACATCATTACTCCCACTGCAGCATAAAGTACTGGAGCCTGAGTTTTTCTGCTTGCTTATGATTTACAGCTTACTAACATAACGTTTTAAACGAATCCGGGTTAGTGAAGCTTTGGCTTTGCTGAATAAAAAAGTACTAAGTGCCA

Function

symbol description
ddc Predicted to enable aromatic-L-amino-acid decarboxylase activity. Acts upstream of or within brain development. Predicted to be active in cytoplasm. Is expressed in digestive system; muscle; nervous system; ovary; and pharyngeal arch. Human ortholog(s) of this gene implicated in Parkinson's disease; aromatic L-amino acid decarboxylase deficiency; bipolar disorder; and inherited metabolic disorder. Orthologous to human DDC (dopa decarboxylase).

NR:

description
PREDICTED: aromatic-L-amino-acid decarboxylase

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0007420 brain development biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K01593 DDC, TDC; aromatic-L-amino-acid/L-tryptophan decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
TU130439 False 1539 lncRNA 0.42 2 3433371 3438696
XM_022674128.1 True 2959 mRNA 0.47 15 3389051 3438726

Neighbor

gene id symbol gene type direction distance location
grb10 grb10,LOC103031323,LOC107551212,LOC107751877,LOC107746967 coding upstream 16365 3284027 ~ 3372686 (+)
cobl NA coding upstream 116448 3147369 ~ 3272603 (+)
LOC103037869 triob,LOC108429234,LOC107746974 coding upstream 382677 2736129 ~ 3006374 (+)
LOC103036916 adcy2a,LOC108429235,LOC108272199,LOC103367001 coding upstream 893983 2242170 ~ 2495068 (+)
LOC103036307 LOC106588695 coding upstream 1221360 2151917 ~ 2167691 (+)
LOC103035455 LOC103035455,LOC108429251 coding downstream 215074 3653800 ~ 3741264 (+)
LOC103037205 tmem65,LOC108429253,LOC108271490,LOC106922370,LOC103135153,LOC106953768 coding downstream 321219 3759945 ~ 3859872 (+)
e2f3 e2f3,LOC108429255 coding downstream 462963 3901689 ~ 3915719 (+)
LOC103038805 NA coding downstream 484935 3923661 ~ 3925572 (+)
tmem158 tmem158 coding downstream 723148 4161874 ~ 4164337 (+)
G96761 NA non-coding upstream 265644 3122855 ~ 3123407 (+)
G96663 NA non-coding upstream 280920 3107781 ~ 3108131 (+)
G96651 NA non-coding upstream 466877 2921469 ~ 2922174 (+)
G96614 NA non-coding upstream 802781 2518172 ~ 2586270 (+)
G96609 NA non-coding upstream 885758 2501157 ~ 2503293 (+)
G96861 NA non-coding downstream 64112 3502838 ~ 3507691 (+)
G96888 NA non-coding downstream 94820 3533546 ~ 3582765 (+)
G96912 NA non-coding downstream 274792 3713518 ~ 3716401 (+)
G96915 NA non-coding downstream 289206 3727932 ~ 3728573 (+)
LOC111193420 NA non-coding downstream 312766 3751492 ~ 3752697 (+)
LOC103040575 ube2i,LOC107677193 other upstream 2580477 799224 ~ 808574 (+)
LOC111193421 mboat1 other downstream 426264 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 1526744 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 2368842 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 2841596 6280322 ~ 6382717 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other downstream 3093790 6532516 ~ 6565003 (+)

Expression


Co-expression Network