LOC111193421 (mboat1)


Basic Information

Item Value
gene id LOC111193421
gene name mboat1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 3864990 ~ 3898919 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU130516
TCTAGCGTAGGCTCCACAGCCAGCACTAAGAAGGGCATGACGGTGTAACAGATGGTCAGCTGAGTGGCCGCCCAGGTCACCACATCATAGGCAAACTTCACAGCGGGAGAGCCCAAGAAATACTGGCGGAAGTTTCTGCGCAcAGCGCGAGCAGCGAGGGTGATGGGAATGCCTGTGAGGAAGGTGAAGTAGTATCCTGGATAAACTCCATGCCACAGTGCAGACAGCGCGAAGGTCAGAGGGGTCTGGTAATACGGCACGCGGTCataacacacaCTCTTCAGCCATACCCCAGTCTGAATGTTCCAGTTGTCAATGAATGATTTGAAGCTGGTTGTTGCCTCTATCTCCCAGATGTGGATATTGGAGACGAGGTCCCAGGACACTCTGCCTTTCTTGTCCACTCCACTGATTCCAAACCCTGCTGCGTTATGGATGGCATCCGCGAGTGTCCACGCGAAGTAGAACTTGGATCGAGCCGCCTGGATGGAGACAAAGGCGTAGGCCAGTCTGCTGAGGAATGAGGCCTGGGTCATGAACTCAGGATCCACGTTGTAGGTGATGGGGAACGCTTTAGCGATTGTGAAGAACCAGACCATGCAGCCGACACACACCAGCAGCTTCTGACACACTGCCCGCACAGGCGAAGGCTCTGAGACTGCATCCCAACCGTTTGGCTCTGAGCTGCCCTCTCGTAGCTTCTTCAGCTTGCTCTGCACGTGTCGCCCCTCTATGAAGTCTACGTATTCCTTGTAGTTGCTGCACGGCCCCACCAGGATGCTCATGAAGTTCAGATTGTAGCTGAGGTCATACCTGATCCAGAGGGATGCCGGTGATGGCGCTGAGAGGCCGCAGCCATGTGCAGCCCGTGGTGGTGAAGCTGTCTGATCGGTCCTCCATTCTTCATCCACTCTCCTCCCCCCTTCTTCCCTCAGCAGCCGGACTCAGCGACCTGTAGCTCGGGTAAAAACTCAGCACCGAGTCGCCAGGAGCAGCAGCATCCTTCCTCCGGTCCTCAGCTCTTCATACACTCTATTAAACACTCTTTAACACACTCATTCATAACCTcatacactctctcacacacacgcccAGCAAGTCGTCTAGAAGTTGTGTGTAGTTACCGAGGCGGGGCGCTTCAGT
>TU130602
CCATTCCCCTGTTGAGCTTTAGTTGGtagacagatggtcttaagtttttttctgcaaaatgtcttggtttaCTTGGGAATGAGTTTTtctgttgatgacggcaatccgtccaggccctgaggcagcaaagcagccccaaaccatgatgccccctccaccatgtttcacagttgtgATGAGATTTTGATGATGGTacgctgtgccttttttctccacacatagcattatgtgttccttccaGACAACTCAATTTTGGATTCATATGTCCACAGTATGTTTTGCCATGCCAGCAAt
>XR_002650519.1
gtgtgtatgtgtatgtgtgtatgtgtactcACAGCGCGAGCAGCGAGGGTGATGGGAATGCCTGTGAGGAAGGTGAAGTAGTATCCTGGATAAACTCCATG

Function

symbol description
mboat1 Predicted to enable acyltransferase activity. Predicted to be involved in lipid modification. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in central nervous system; cranial ganglion; neural tube; and neurons. Orthologous to human MBOAT1 (membrane bound O-acyltransferase domain containing 1).

NR:

description
PREDICTED: lysophospholipid acyltransferase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130516 True 1143 lncRNA 0.55 7 3879698 3898919
TU130602 False 294 lncRNA 0.44 1 3866906 3867199
XR_002650519.1 False 101 ncRNA 0.50 3 3864990 3882676

Neighbor

gene id symbol gene type direction distance location
LOC103037205 tmem65,LOC108429253,LOC108271490,LOC106922370,LOC103135153,LOC106953768 coding upstream 5118 3759945 ~ 3859872 (+)
LOC103035455 LOC103035455,LOC108429251 coding upstream 123726 3653800 ~ 3741264 (+)
grb10 grb10,LOC103031323,LOC107551212,LOC107751877,LOC107746967 coding upstream 492304 3284027 ~ 3372686 (+)
cobl NA coding upstream 592387 3147369 ~ 3272603 (+)
LOC103037869 triob,LOC108429234,LOC107746974 coding upstream 858616 2736129 ~ 3006374 (+)
e2f3 e2f3,LOC108429255 coding downstream 2770 3901689 ~ 3915719 (+)
LOC103038805 NA coding downstream 24742 3923661 ~ 3925572 (+)
tmem158 tmem158 coding downstream 262955 4161874 ~ 4164337 (+)
LOC103035111 NA coding downstream 271527 4170446 ~ 4194866 (+)
decr1 decr1,LOC107580031,LOC107756153,LOC107704989,LOC107705494 coding downstream 303044 4201963 ~ 4225743 (+)
LOC111193419 NA non-coding upstream 110220 3753172 ~ 3754770 (+)
LOC111193420 NA non-coding upstream 112293 3751492 ~ 3752697 (+)
G96915 NA non-coding upstream 136417 3727932 ~ 3728573 (+)
G96912 NA non-coding upstream 148589 3713518 ~ 3716401 (+)
G96888 NA non-coding upstream 282225 3533546 ~ 3582765 (+)
G97000 NA non-coding downstream 33892 3932811 ~ 4195776 (+)
G97029 NA non-coding downstream 197215 4096134 ~ 4165899 (+)
G97035 LOC103034794,LOC108437355,LOC104937918 non-coding downstream 297029 4195948 ~ 4197937 (+)
G97038 NA non-coding downstream 327021 4225940 ~ 4287454 (+)
G97042 NA non-coding downstream 343611 4242530 ~ 4256999 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other upstream 426264 3389051 ~ 3438726 (+)
LOC103040575 ube2i,LOC107677193 other upstream 3056416 799224 ~ 808574 (+)
ndufaf6 ndufaf6 other downstream 1066551 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 1908649 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 2381403 6280322 ~ 6382717 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other downstream 2633597 6532516 ~ 6565003 (+)
adar adar,LOC107723500 other downstream 2755431 6654350 ~ 6681691 (+)

Expression


Co-expression Network