G97029


Basic Information

Item Value
gene id G97029
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 4096134 ~ 4165899 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU130739
cgccagtcttacacactgcttttggataactttatgccactcctggtgcacaaattcaagcagttcagcttggtatgatggcttgtgatcatccatcttcctctcgattatattccagaggttttcaatttggtaaaatcaaaggaactcataatttttaggtggtctcttattttttttccagagccgtaAGTACGAGTTTTAAAAGTGGACTTGATGGCAGCATTAGTTCACAGTTTGTGGCCATAAACAGACTAGGATACATctatactaataaaaaacacaacataatttcattttttcacATAAATAAAGTCCGCAAAAATGCATCTTCTAATCAAAATTGCAACAAACTTTGGCTGCGTTTTTCGACTGTAAGCATATAGTCCAGAACAGTCTTCTATGACGTAGCAGCCGAGAAATGCAGTTTTTTGTGCTTTGCTCTAAACAAGATGAGCTGTTCTGCTGCCTATTTGGTGCTCATTTGTTTGGTCTGAAACCTTGACAGTGACACTATTTGGTCAGCCTGATTTTACATACGTACAATACATAACATAAAGACGTCTCACAGTCCATTAGTTTCAGACTCGGTGTGAATAGCAGCATaaatttatgtgtgtttttttctctcacaacTTGAATGGTTTTTTAGCCCGTGAAAATTGGACTCATTGTGAAAGGGCCTTTAGATTTGAACAAGACTCATTCAGCGATAAAAGAAAAATACGACTGCCTACttccagactgttttttttttttttgcttcatttgCAGTTGAACATCACAGACATGCTCACACTTGGAGAGCCGAGAAATCATGAACAACATAATACATTGAAGAAAACTGCAAGTGGACTTGTACCTTAACGCTTTAGACCAGTGCCAGTGTGTAAGTTAACTGACTGTGAAAGAAGCAAGATTATGGTGAGAAACCAGAAGAAATCTGTTCTTTCTGAATGTGAACAGGCTTGGAAGGAGCTAGCTAACTGACTAGCCTAGCTGGGATTTGTTTTATAAATCTATATGACTAGAGACTTTAGCCTAATAGCTAGCctgttatgttttattcagGTGTATCTTCAAATGTTTgtatccttttttattattacctttaaaaaatctgtaaaaacaaGACTAGACATGTTTACAGTAAAGGACTTTTATAAGAAACATTAGGACTAATCAAGTACAAGAATAAGAGGTAAACTGTTTTGTATTGTTGTTGCCTACTGTAAGCCTTAAGACTAGCTTAATAATACCTGTATTTGTACGAGctaataaaaatgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130739 True 1288 lncRNA 0.36 2 4096134 4165899

Neighbor

gene id symbol gene type direction distance location
LOC103038805 NA coding upstream 170562 3923661 ~ 3925572 (+)
e2f3 e2f3,LOC108429255 coding upstream 180415 3901689 ~ 3915719 (+)
LOC103037205 tmem65,LOC108429253,LOC108271490,LOC106922370,LOC103135153,LOC106953768 coding upstream 236262 3759945 ~ 3859872 (+)
LOC103035455 LOC103035455,LOC108429251 coding upstream 354870 3653800 ~ 3741264 (+)
grb10 grb10,LOC103031323,LOC107551212,LOC107751877,LOC107746967 coding upstream 723448 3284027 ~ 3372686 (+)
LOC103035111 NA coding downstream 4547 4170446 ~ 4194866 (+)
decr1 decr1,LOC107580031,LOC107756153,LOC107704989,LOC107705494 coding downstream 36064 4201963 ~ 4225743 (+)
LOC103036464 kiaa0319 coding downstream 231192 4397091 ~ 4421912 (+)
kcnv1 kcnv1,si:dkey-201i6.2,LOC107666889,LOC107717377,LOC107668317 coding downstream 293653 4459552 ~ 4488435 (+)
LOC103036163 si:dkey-22o22.2,LOC108437325,LOC108272818,LOC107666790,LOC107717379,LOC107713796,LOC107668308,LOC107592533,LOC107600533 coding downstream 490603 4656502 ~ 4884316 (+)
LOC111193419 NA non-coding upstream 341364 3753172 ~ 3754770 (+)
LOC111193420 NA non-coding upstream 343437 3751492 ~ 3752697 (+)
G96915 NA non-coding upstream 367561 3727932 ~ 3728573 (+)
G96912 NA non-coding upstream 379733 3713518 ~ 3716401 (+)
G96888 NA non-coding upstream 513369 3533546 ~ 3582765 (+)
G97035 LOC103034794,LOC108437355,LOC104937918 non-coding downstream 30049 4195948 ~ 4197937 (+)
G97038 NA non-coding downstream 60041 4225940 ~ 4287454 (+)
G97042 NA non-coding downstream 76631 4242530 ~ 4256999 (+)
G97048 pnp4b,LOC108437351,LOC108272756,LOC106605471 non-coding downstream 124151 4290050 ~ 4290894 (+)
G97053 NA non-coding downstream 163119 4329018 ~ 4330306 (+)
LOC111193421 mboat1 other upstream 197215 3864990 ~ 3898919 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other upstream 657408 3389051 ~ 3438726 (+)
LOC103040575 ube2i,LOC107677193 other upstream 3287560 799224 ~ 808574 (+)
ndufaf6 ndufaf6 other downstream 799571 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 1641669 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 2114423 6280322 ~ 6382717 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other downstream 2366617 6532516 ~ 6565003 (+)
adar adar,LOC107723500 other downstream 2488451 6654350 ~ 6681691 (+)

Expression


Co-expression Network