G97042


Basic Information

Item Value
gene id G97042
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 4242530 ~ 4256999 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU130759
agtaggggtgcccaaactttttcatatgactgtatattcattctaaaaactggggtgtcgggtcgctttctgcagaagttcttctggccacgtcacacggcTTAACGTACTTATGTCACATGTACAGCATCTAAAAGTGGATCCAGCttttttactgaatgcgagcggctggtggagcaatggagacgtCAGAAGGCGAACCTTAGAGCTCAGTAGGTCATTCACTTttagtaaaaactaaaaaaagtgtaGTTAAAGTGAAATGAATGACTGAGTgcgctgtctctttctctgactgaacataacctggaatcggatttgCCACTAAGAGCACTCTAGCAACTCCATTTTTGGTCTAAGCTGCTGTAGGTACAACCTGGAACCCGTGATCTCCAGCATTCTCACATTACTGCCTTTTTATCAACTTCTTCTAAAAGGTCAGTGTTGTTTCTGTGTGACAGATCAATACAGGGTCTATCAAACAAAGGTGGACTGGTAGTTTGTGGGATGTTGGCCAGCGGGGTTATGTTTCGGTTACAGTGGCAGAGTAAAATGAGAAAGGGTAAATaaaggTGAGTATGTGACGcctaccacagactctgtagttcctttttctgactctgccgttcccgtctatggacaatccccggtccggaactacacctcccagcatgcacctgacaACACCACGTGTTCGGACTCAGCCAATCGCGGCTCATTCGTGCGGTCTACGTCACCGGAATTCTagattgtgttcaggtgttgGCAATTTACTTCAGATATAACtacctgtctgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130759 True 797 lncRNA 0.45 2 4242530 4256999

Neighbor

gene id symbol gene type direction distance location
decr1 decr1,LOC107580031,LOC107756153,LOC107704989,LOC107705494 coding upstream 16787 4201963 ~ 4225743 (+)
LOC103035111 NA coding upstream 47664 4170446 ~ 4194866 (+)
tmem158 tmem158 coding upstream 78193 4161874 ~ 4164337 (+)
LOC103038805 NA coding upstream 316958 3923661 ~ 3925572 (+)
e2f3 e2f3,LOC108429255 coding upstream 326811 3901689 ~ 3915719 (+)
LOC103036464 kiaa0319 coding downstream 140092 4397091 ~ 4421912 (+)
kcnv1 kcnv1,si:dkey-201i6.2,LOC107666889,LOC107717377,LOC107668317 coding downstream 202553 4459552 ~ 4488435 (+)
LOC103036163 si:dkey-22o22.2,LOC108437325,LOC108272818,LOC107666790,LOC107717379,LOC107713796,LOC107668308,LOC107592533,LOC107600533 coding downstream 399503 4656502 ~ 4884316 (+)
LOC111193422 NA coding downstream 691384 4948383 ~ 4954529 (+)
plekhf2 plekhf2,LOC107666819,LOC107600513,LOC107668314 coding downstream 735978 4992977 ~ 5029269 (+)
G97035 LOC103034794,LOC108437355,LOC104937918 non-coding upstream 44593 4195948 ~ 4197937 (+)
G97000 NA non-coding upstream 46754 3932811 ~ 4195776 (+)
G97029 NA non-coding upstream 76631 4096134 ~ 4165899 (+)
LOC111193419 NA non-coding upstream 487760 3753172 ~ 3754770 (+)
LOC111193420 NA non-coding upstream 489833 3751492 ~ 3752697 (+)
G97048 pnp4b,LOC108437351,LOC108272756,LOC106605471 non-coding downstream 33051 4290050 ~ 4290894 (+)
G97053 NA non-coding downstream 72019 4329018 ~ 4330306 (+)
G97067 NA non-coding downstream 167655 4424654 ~ 4495490 (+)
G97074 dek non-coding downstream 187248 4444247 ~ 4453022 (+)
G97080 NA non-coding downstream 249184 4506183 ~ 4559257 (+)
LOC111193421 mboat1 other upstream 343611 3864990 ~ 3898919 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other upstream 803804 3389051 ~ 3438726 (+)
LOC103040575 ube2i,LOC107677193 other upstream 3433956 799224 ~ 808574 (+)
ndufaf6 ndufaf6 other downstream 708471 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 1550569 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 2023323 6280322 ~ 6382717 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other downstream 2275517 6532516 ~ 6565003 (+)
adar adar,LOC107723500 other downstream 2397351 6654350 ~ 6681691 (+)

Expression


Co-expression Network