LOC107197182



Basic Information


Item Value
gene id LOC107197182
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 4150003 ~ 4178426 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU130868
TCTTGGCATAATTACCTGTTATTCCATTTCCCACTGAAACACCAAAAGTTGTTGGTTCCAGCTGTTCTTGTCCAGGAACCTGCAAAGATACGCTGCTCTCAAAATTCATCTCCATTCCTTTGATTGTCCCATTGCGACAAAACCTCCCAATGCTGGTTGTGCTGTTGGACACTGTGTAGACATGCTTGTCCGGACAGCTCTCTGTGGCCCGGATCTGCCTTAAACCAGTTTTGGTGAAGTCCAAGCTGAAAGAATTCTCGTCTGAGCCATTGATGATCCACGTGAAGGTGCGGCTGAAGTTTTGAAGAGAGGGGTACTGCTCTGGTGTGATGTTCCTGTCGCATGATTCGGTACACACAATGTATCTGACAATCTCCACAGTGAAGAGGTTCTCAGGTTCTGTACAGTTGAATTCTACATCTGCACTGTTCTGGAGAGTCACAGAGGACTGGCATGACTTCCCAATACAGACTTCACACTTTGACACGGCAGTCTGAGTCCTGTTGATGAGTACGGTAGCACCACTGTGAACATGTACGGTGAGCACCAGGCCacctgagtaaaataaaaagaaaaactttaagcagattaatgtaaaaaaaaaaaaaaatacaggttttAACATAAAACATCTGCACTTTCTGAAATACAGAAGAATGTGAGTCAAAGACCACAGCATATCCTAAACTCCTCTGAAATATAACACACTCACAGTCATGTGTTCTCATGTCCTTTAGTCACAATTtcctgaggtaaaaaaaaagttccttcCCGCAAAGGGTTTCAGCCAATAATATACACAGAAAACTACACTATAGAGTGATTAAGCGTACCATTATGAACATCTCTTTGTTTCAGGTCCACTGACTATATAGAGTGCTGTATactttggcaaatgtgagacagGGTTTTGTCTACTTTTTGGTCAGAAGTGTTTTTTGCTTTGAACTCTCCCATGAAAACCAGAGATCAGCAGTTTTACACATGTTGTTCACGGTTCTTTTGCaaccttctggatgagttgtccatgcccttatgttttcttcatttgtaaataatctctctctctcactgtggtttcctggagtcccaaagccccAACAGTCCCAAAGCTGCAACAAGAATGTTAGTGAGGTAAGGATGTTTGATTGCCTACTCACCTAATCCCCATCTCCCCAAAAATACTGGATGGATTACCATCATTTCATAAAACACAGTTGCACAGTTGAATTGCTGAATGCTGGAGGGTTATATACAATTTTTCCCATGCCTTGCATTAGCCATTGTGTCAGTAGATACATTTAGCCAGTAATGAAAGAAGCGTTTTCGTCATCATTCAGTGCTGAGCAGAAAACATGACCATAAGGCCTAATCCCATTCCCCCTTGGCCGTACCCCTGTTTTGCGTGTGCATGCCAAGGTGTAGTGGTGTCCCTATTCTTGTCAGGCTGGAGGGTAGGGTGAAGGGATAAGGCTTGTTAGCCctttaaactgagattttttagaggcacacagctaactctcgtgttccaccttaaatggtgcaccTTAAATGGTTCAAACGGTGCAAcagttaatttcagctccccattacaaaggaattaaggaatagacaataataattcatttctgcaccatctcccccctttctgaagacatacaataaagccctaaagttatttagttaaccagcagcagctaggttactaaACTGTAGCGCTCCTGATGATGTATCGAGTGCTTGAAGGGTTgacccaattcttagggggaggattttacCCCTTTCCGATGGTTGCATTTGAAAAGAAGGGGAAGGGGTAAATTGTGAAATTTACccggggtgaaatgggattgggcttaAGTGTTCAGGTTTCAGCGCTTGAAACTTCTCCCCAGATGGCAAATGTGTGCCtgttttacacagtttaaaatCACAAATAGGCCAAAAGTCCTTTTCTAAACCATTGTTTAACAACTTTTTTCACTGTCCTCAAAGATTTCTGACACTCAGGGTCTGTTTACATACAACATTAACATCCATTTTTGGTGATCAGTTCAGGCTTGGATTCCACTTGCCCGTGTAAAAAGCCAAGTGAAAACACTCCAAATCGCATTATGATCAGATTACGATCGGATGACTCAAATACCCTTCAGAGATGGTCAGAGTTTGATCCTTCCTATACacactgatgtgtttttttttgcagtgatcTTATCTGATCCATTGGGGACATGGTGTGAAGAGaatccaatcaaatcaaatctagatgcttcatcagcagccagagtctgagagagcacaattgaccttgctctctctctgggtgggtagatggcgctctctccccacttAAATTCCAAGGTGATGTTAGTTAGCACAGGCGCCTGTTAGCTGACGTATCAGAGCTTGGTTGCTGCACGTTCCTTATAGTGCGCTGGCTACccggtaatgctacatcagcagaaatttgaaaagaggcagtggctgactttacatgtatcagaggaggcatgtgctagtcttcacccctCTGGTGTTaagggcattactagtgatacgGGTAGCCCTAATACCTGggctgggtaattggccttccaaattgtGTCAACAACAGAGCTGAACAATGAAATGAGAATGACGTGTTTTTGCCCATCTGCCAGTCAAGCAGCACACAGGCTGGAGCTGATCATGTCATGTCATCTGAGCTGGGCAACAAGCTGTTAATTGGACACTCATGCAGACCTTttcacaattttacattaattaggACTGGAAGTGGCAGATTTTATAAAGTTCCAAGTTACATAGTAGTCATGTTGTGGACATACAGTGTAGTTAAggcaattatttaataatattgatTAATATGATCCCAATATCATTATGTatcctttaaataaacacattaaatcacaCTAATATTTTATACTCCTCAAGCCGCAGAAATGCAGTTTATCCAAAAAGGAAACCTTCTAAATTAGCTAAAACAAAGTCTGATTTTTCcttgtaaaacatttaacatataCTGGTCATTAAAAGACCAACAAACAGGTCTCCTTCCATCATTTGTTCATTAAATTTTAATATCTCTAGGTCtccagtatgaataaatgctacgtaatgctgttttttcttttcctatttttttttttttttaagtggtccggtgatccggtataatgctgctttaatccgGTGGTAAAGTGGGTGGGGAGaaataggattttggctcttgctcgtgaatattcatacatgcaaacacattgcctctgattggctaacagcactgcaaggcagacaacagttagaaacattttaaaataaagacatttttacgctaataacagtctttgcgttgtcatatgttactttacaacatgtctaatgccctgctaagtgcagttcagccactgacctagtcttagagtctctgtaaaatgtcaAATCCACCAAAGATCCTATGTAAATCCTATAGTTGCACACAGACGTTAGTAggccaggtccagaaagtaaggTTCCACCCTGGGCTTTTTTGTTGGTTAAGCTGCAGCAgacagttggaacaaaaccctggggtggatttgaactagtgtaaacagaactctttaaaacatacacatatcccaattgtacttcgctggtggtgttccgtagacaaattctaaccattttgTTCTTTAGCTCTAAATTACTGGggaaagcatataacactgatgtgttatttgcatgaatactaattgtccacagacaatggaggttgaagaacagtttcatatgcagcatatacaactcggagagacctattgtatttcacaaagaacaagaaaaagtgaattttaacagaaaaacacctttaaatattatggaatacacatttaatgcTCTGAGAGTGagatgtgttctttttccttgacgtgaaatagaaaataatgcTTAAACCACTGAGGACCTTGAGACAAGCTACAATTAGTCCACCATTCCTGAACTAGCACCCTGAAGGCACATCTCAAACACACCTAAATGAGCATGGCCTTCATCCAGACATGCTAAATCTCACTCATATTTTAAACCACCTTCCGGAAGCTCAATGTCTGCAGCTTTAGTACAGGCATGCAAAGAAATTCACTTTGTTCATATTAATGCAGGAATATGAGGAGTCCTATTAGCATAGTCAGTGGGAGGGGCTTAACAGAGCACTGAGAGGGATTGTATTCACTGAGGCACTGAGTTTATAACAAAGCTTAAgacaaagtcatttttttttctttttgtaaaaaaaggaCAACATGGTTGGGTGGACCTCCCTGATATTAGCATCGGTCTTCTCTGCAGACGGGATGTAAGATGTAAGAAGTCTCTGCTATCTCTCACAACcagtttgttgttgttgtggttgTCTATTTCATTGCCAatagtaaaaaacaataattatcaCAAGATAATATGAGACAATAACCCTACTAGCACCTAACCCACTCTAAACAATAGATGGCACCAACACACCATTCATTATTATCGCCCCAAAATCACTGCTGTTCAGAAGGGATGGAAACTATGGATCTGTGCATGGAACTATTTAAACGGAAATACATGGCTTTATa
>TU130870
TCTTGGCATAATTACCTGTTATTCCATTTCCCACTGAAACACCAAAAGTTGTTGGTTCCAGCTGTTCTTGTCCAGGAACCTGCAAAGATACGCTGCTCTCAAAATTCATCTCCATTCCTTTGATTGTCCCATTGCGACAAAACCTCCCAATGCTGGTTGTGCTGTTGGACACTGTGTAGACATGCTTGTCCGGACAGCTCTCTGTGGCCCGGATCTGCCTTAAACCAGTTTTGGTGAAGTCCAAGCTGAAAGAATTCTCGTCTGAGCCATTGATGATCCACGTGAAGGTGCGGCTGAAGTTTTGAAGAGAGGGGTACTGCTCTGGTGTGATGTTCCTGTCGCATGATTCGGTACACACAATGTATCTGACAATCTCCACAGTGAAGAGGTTCTCAGGTTCTGTACAGTTGAATTCTACATCTGCACTGTTCTGGAGAGTCACAGAGGACTGGCATGACTTCCCAATACAGACTTCACACTTTGACACGGCAGTCTGAGTCCTGTTGATGAGTACGGTAGCACCACTGTGAACATGTACGGTGAGCACCAGGCCacCTGAGACTGAGCTCCACTGCAGAACTCCACACAGAAGAACGAGACTCAAACCCCAACTCCACATGACTTTCTCTTCCTCTGAAGGTcagaattaatgaataaaatcacagtggaGCCATTGAAACTCTGAAAGCTGGAGcgcttcttcctcttctccccTGAGAGGAGCTCACTTCCTGAACTGGAGCTGTTAGCCTAGCACGCTGCTTCTCAGGTGGGCTCAGGGCTCCaccctctctacctctttctccccctccctctctctctcgctgtgtgtgtgtgtgtg
>XR_001518422.2
TTATCTGATCCATTGGGGACATGGTGTGAAGAGaatccaatcaaatcaaatctagatgcttcatcagcagccagagaaagagcaaggtcaattgtgctctctcag

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU130868 True 4601 lncRNA 0.41 3 4171818 4178426
TU130870 False 841 lncRNA 0.49 3 4170440 4178426
XR_001518422.2 False 105 ncRNA 0.43 3 4150003 4174207
Loading

Neighbor


gene id symbol gene type direction distance location
lars2 lars2,LOC107598928 coding downstream 10097 4022224 ~ 4139906 (-)
limd1 LOC106605519,LOC107688969,LOC107598949 coding downstream 152089 3939150 ~ 3997914 (-)
LOC111193417 rdh13 coding downstream 559923 3583849 ~ 3590080 (-)
LOC103033958 decr2,LOC107667207,LOC107677236 coding downstream 567010 3570916 ~ 3582993 (-)
rab11fip3 rab11fip3,LOC108429222,LOC107556639,LOC107677234,LOC107717866,LOC107554161 coding downstream 581018 3506196 ~ 3568985 (-)
clec3b LOC103034794,LOC108437355 coding upstream 17547 4195973 ~ 4199792 (-)
calb1 calb1,LOC107704882,LOC107588486,LOC107700706 coding upstream 50211 4228637 ~ 4267641 (-)
LOC103032754 NA coding upstream 193505 4371931 ~ 4394962 (-)
aldh5a1 aldh5a1,LOC107700704,LOC107704994,LOC107755744,LOC107705391,LOC107556105 coding upstream 248125 4426551 ~ 4442953 (-)
LOC103030979 NA coding upstream 354046 4532472 ~ 4534586 (-)
G96996 NA non-coding downstream 231647 3912009 ~ 3918356 (-)
G96984 NA non-coding downstream 285948 3858928 ~ 3864055 (-)
G96983 NA non-coding downstream 320266 3829008 ~ 3829737 (-)
G96961 NA non-coding downstream 496337 3653462 ~ 3653666 (-)
G96935 NA non-coding downstream 625258 3444988 ~ 3524745 (-)
G97143 NA non-coding upstream 38888 4217314 ~ 4226794 (-)
G97142 NA non-coding upstream 40862 4219288 ~ 4221654 (-)
G97155 NA non-coding upstream 151284 4329710 ~ 4330114 (-)
G97161 NA non-coding upstream 169751 4348177 ~ 4348625 (-)
G97158 NA non-coding upstream 246228 4424654 ~ 4495490 (-)
mboat1 mboat1 other downstream 250755 3878696 ~ 3899248 (-)
LOC103031019 NA other downstream 2334969 1811701 ~ 1815034 (-)
carmil1 carmil1 other downstream 2371903 1582007 ~ 1778100 (-)
LOC103043490 NA other downstream 3884409 252340 ~ 265594 (-)
dek dek other upstream 265803 4444229 ~ 4453002 (-)
LOC103028279 NA other upstream 1362487 5540913 ~ 5573904 (-)
G97717 NA other upstream 1400136 5578562 ~ 5586666 (-)
riiad1 NA other upstream 1412556 5590982 ~ 5593496 (-)
LOC111193431 si:ch211-105c13.3,LOC108441945,LOC107594941,LOC107673711,LOC107582067,LOC107677027,LOC107735771 other upstream 1780895 5959321 ~ 6012784 (-)

Expression


LOC107197182 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC107197182 Expression in each Bioproject

Bar chart with 7 bars.
LOC107197182 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network