G97882


Basic Information

Item Value
gene id G97882
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 6754741 ~ 6756061 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU131915
TTTCTAAAGCTGATACTATATATGCAAAGGGATATATATGCTAGTCctagggttgtgggttcaattcccaggtTCGATAAGCttgcagtgttgtactcttGAGCAATGCCAATAACTCTATAAATTCCTGGGGCACTTTCCTGACAATGGCGGCTTTCTAAAGCTGATACTATATATGCAAAGGGATATATATGCTAGTCctagggttgtgggttcaattcccaggtTCGCTAAGCTTGCAATGTTGTACTCTTGAGCAATGCCAATAACTCTATAAATTCCTGGGGCACTTTGCTCTGACAATGACAAGTTTCTAAAGCTGATACTATATATGcaaagggatatatatatatgctagtcctagggttgtgggttcaattcccaggtTCGCTAAGCttgcagtgttgtactcttGAGCAATGCCATTAACTCTCTAAATTCCAGGTGTGCTGAGCTCTAACAATAATGACTTTCTAAAGCTGATACTATGTATGCAAAGGGATATATATATGCTAGTCctagggttgtgggttcaattcccaTGTTCGCTAAGCttgcagtgttgtactcttGAACAATGCCAATAACTCTATGAATTCCTGGGGCACTTTGCTCTGACAATGACGGCTTTCTAAAGCTGATACTATATATGCAAAGGGATATATATATGCTAGTCctagggttgtgggttcaattcccaaGTCCTCTAAGCTTGCAGTGTTGTACACTTAAGCAATGCCAATAACTCTATAAGTTCCTTTGGGCACTTTGCTCTGACAATGACTTTCTTAAGCTGATACTATATATGCAAAGGGATGCTAGTCctagggttgtgggttcaattcccGGGTTCGCTAAGCttgcagtgttgtactcttGAGCAATGCCATTAACTCTCTAAATTCCAGGTGTGCTGTGCTCTAACAATAATGACTTTCTAACGctggtactgtatttgcaaAGACATACTGATcccagggttgtgggttcacaCCCCCAAAGTCAGAATTTGATATAATGGAATAGGGTTGTGTCTCAGTTCAGTACAGTTAGTTTTTGTTCTGAAAAATAAGAACTGGCTAAAATTTGCCTTGGCAAATATTGTGATAAGATAAATgatttcatcattttatttctttttgctAAGTTACAAAATCAGGATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131915 True 1164 lncRNA 0.40 2 6754741 6756061

Neighbor

gene id symbol gene type direction distance location
snx27 snx27,snx27b,LOC108429939,LOC107699551,LOC107657641,LOC107714694 coding upstream 123005 6611718 ~ 6631736 (+)
LOC103023101 s10i,LOC100304668,LOC107582076,LOC106606010,LOC107657639 coding upstream 146787 6605504 ~ 6607954 (+)
LOC103022085 NA coding upstream 180991 6558877 ~ 6573750 (+)
LOC111193433 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143 coding upstream 191205 6558865 ~ 6563536 (+)
krtcap2 krtcap2 coding upstream 201460 6548755 ~ 6553281 (+)
rab13 rab13,LOC107723501,LOC107714709 coding downstream 96722 6852783 ~ 6860824 (+)
fam189b fam189b coding downstream 105537 6861598 ~ 6879371 (+)
nbn NA coding downstream 129508 6885569 ~ 6905841 (+)
gtpbp10 gtpbp10 coding downstream 179478 6935539 ~ 6951926 (+)
LOC103046789 LOC108429918,LOC108429917,LOC108257096,LOC108280559,LOC108266725,LOC108266736,LOC108266743 coding downstream 270232 7026293 ~ 7036746 (+)
G97674 NA non-coding upstream 233826 6508111 ~ 6520915 (+)
G97672 NA non-coding upstream 290521 6462566 ~ 6464220 (+)
G97639 NA non-coding upstream 595821 6154825 ~ 6158920 (+)
G97637 NA non-coding upstream 610859 6141717 ~ 6143882 (+)
G97624 NA non-coding upstream 689940 6063761 ~ 6064801 (+)
G97883 NA non-coding downstream 655 6756716 ~ 6757072 (+)
G97884 LOC103044954,LOC107599504,LOC103388254,LOC107589412,LOC101077558,LOC103356523,LOC108429942 non-coding downstream 18217 6774278 ~ 6850763 (+)
G97896 NA non-coding downstream 55460 6811521 ~ 6812360 (+)
G97870 NA non-coding downstream 68857 6824918 ~ 6827579 (+)
G97901 NA non-coding downstream 127182 6883243 ~ 6884575 (+)
adar adar,LOC107723500 other upstream 73050 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 189738 6532516 ~ 6565003 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other upstream 372024 6280322 ~ 6382717 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other upstream 904211 5807568 ~ 5850530 (+)
ndufaf6 ndufaf6 other upstream 1773794 4965470 ~ 4980947 (+)
apoc1 NA other downstream 306071 7062132 ~ 7066029 (+)
G97926 NA other downstream 312627 7068688 ~ 7070129 (+)
G97931 NA other downstream 371743 7127804 ~ 7130809 (+)
G98636 NA other downstream 2556345 9312406 ~ 9312803 (+)
G98840 NA other downstream 3240143 9996204 ~ 10002046 (+)

Expression


Co-expression Network