G97901


Basic Information

Item Value
gene id G97901
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 6883243 ~ 6884575 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU131946
ctgaactcttccacaattccagcaccatgaatcctgacattgttatcttggaatatggctgtgccatcagggaagaaaaaataaatccgtTGATCCAggaataagctggtctatattcagtatattcaggtagtcagctgacctcattctttcagcacatactgttgctgaacctaaacctgcagaccaactgcagcatcaaccaaccaaccccacatcatttacttatttaaatccaggtggagatttttttttggccaggcagtgtggTTACAGTATGTatgtctacaaacatttttccacaaatcagtgaaaaaaaaaaagtttttattatatatgtagaAACCCAATTTAGTTTATTGGACTtggtaaattgttcttaaatatatattttttgcgaTATCTCGCTAAACCTTTAAAGAAACTCTTTTAATTTCCTTTTCTAATTTCTCacttttcagtttaaaaagGAGATCTCTACATTTTCTATATACATTTTGAGTGCTTAATTGGGACAGTTTCAAATGGAAGTAATAAGTGATAGATAAGAACTAGTTTTTAATAGATCACTAGATCTGGTGGAGCTAGTAAGGAATCACAAGTTTACTGTAAAGTCTGTAAACTTAATATTGGCATCTTAAAATATCTGAAATTATATTTTCCATTACCTTTAGATACCCTGCTTTGACCCTGTACCTAAAATCACTTCCCAAATCGGGAATCAATTTGAAAGAAATTCTGTTTGCGTGAGTTGAAAGGGTTAATGGTTATTTAACAGTATAGCACAAAAAGTGTTGCACAGTTGTTGAATAGCCCTGTTGAGTACTATACAGAACCccttttcttagagtgtagtgTTCAGGAAACCAAGCTAAAGGGTTAACCGCAGTAGGTACGTATATTTCCTTTTGATACCAATAAAGCGTTTTAATTTGATGTAAATATTTTGGACTTTCAATTCACTGACACacttatattaaaataagagagttaaaatgtgaaatatcgAGCACTGAAACCACTTGAAAAGAAGCTTCAAGACTTACCTCCTGCATTGCACTCTCACAGCAGCGGAATGGAAGGACGTTCATGGATCTTGTAATATATTGTTGATctgggaatataaaaaaaaatacaattcaaaAGCAATTCAAACTCAATAAACTTTTAATGCAAGCCTGTAATAAAAACATgctgaatatttttattgtgtatgCACTCTTTATTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131946 True 1229 lncRNA 0.34 2 6883243 6884575

Neighbor

gene id symbol gene type direction distance location
fam189b fam189b coding upstream 3872 6861598 ~ 6879371 (+)
rab13 rab13,LOC107723501,LOC107714709 coding upstream 22419 6852783 ~ 6860824 (+)
LOC103021742 kcnn3,LOC108280396,LOC107595057,LOC107699550,LOC107723559,LOC107657645,LOC107714686 coding upstream 60201 6712421 ~ 6823042 (+)
snx27 snx27,snx27b,LOC108429939,LOC107699551,LOC107657641,LOC107714694 coding upstream 251507 6611718 ~ 6631736 (+)
LOC103023101 s10i,LOC100304668,LOC107582076,LOC106606010,LOC107657639 coding upstream 275289 6605504 ~ 6607954 (+)
nbn NA coding downstream 994 6885569 ~ 6905841 (+)
gtpbp10 gtpbp10 coding downstream 50964 6935539 ~ 6951926 (+)
LOC103046789 LOC108429918,LOC108429917,LOC108257096,LOC108280559,LOC108266725,LOC108266736,LOC108266743 coding downstream 141718 7026293 ~ 7036746 (+)
LOC103043120 LOC108429949 coding downstream 164626 7049201 ~ 7051416 (+)
LOC103042602 NA coding downstream 192040 7076615 ~ 7081155 (+)
G97884 LOC103044954,LOC107599504,LOC103388254,LOC107589412,LOC101077558,LOC103356523,LOC108429942 non-coding upstream 32480 6774278 ~ 6850763 (+)
G97870 NA non-coding upstream 55664 6824918 ~ 6827579 (+)
G97896 NA non-coding upstream 70883 6811521 ~ 6812360 (+)
G97883 NA non-coding upstream 126171 6756716 ~ 6757072 (+)
G97882 NA non-coding upstream 127182 6754741 ~ 6756061 (+)
G97930 NA non-coding downstream 233035 7117610 ~ 7125636 (+)
G97929 NA non-coding downstream 235248 7119823 ~ 7125239 (+)
G97938 NA non-coding downstream 334657 7219232 ~ 7219527 (+)
G97940 NA non-coding downstream 354956 7239531 ~ 7239765 (+)
G97942 rps19,LOC107657656,LOC100689943 non-coding downstream 375416 7259991 ~ 7280844 (+)
adar adar,LOC107723500 other upstream 201552 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 318240 6532516 ~ 6565003 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other upstream 500526 6280322 ~ 6382717 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other upstream 1032713 5807568 ~ 5850530 (+)
ndufaf6 ndufaf6 other upstream 1902296 4965470 ~ 4980947 (+)
apoc1 NA other downstream 177557 7062132 ~ 7066029 (+)
G97926 NA other downstream 184113 7068688 ~ 7070129 (+)
G97931 NA other downstream 243229 7127804 ~ 7130809 (+)
G98636 NA other downstream 2427831 9312406 ~ 9312803 (+)
G98840 NA other downstream 3111629 9996204 ~ 10002046 (+)

Expression


Co-expression Network