G97980


Basic Information

Item Value
gene id G97980
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 7724230 ~ 7726150 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU132071
ATAGAAACAGTGCTCTAAAAAAACGCAGAGAGAAAACTCATCCAACAAAAAGAAAGGCCTTGTacattttaacacagcaaaaaaaaaaaaaaacagatatgcaCACTGGCTGGCACAGTTTTGAGTGATAAGGATGTGGGCCAATCAGAATTCAGCCAGAGAAAGAAGCCAAATCAAaagcaaatcaaattaaatatatagtgtatagtgctTTTACTAAATTTTTAACTAAACATCTTCTAATCTAAATCTACTCaaacactaaaataatttttctacagaaagaaacacacagcaaacagcatgacctaaataaaataaatacaaatatttggcAAGTGAAATGACAtggcaaaataaacttattttcagccaaaaaaagtgaaataacaaataattcaTACTAAACAAAATTATCCTCAATATGTAGCTTGCTAGCATGCTAACCGCCCACGCCGATAAACACCCACCCACTTGCGACACTTTACGAACAGCCTCAAACACACCTAAAAGAGACAACCATGGGGCGACACAAGTGATTTGTCGCCTGCCAGTGTGAACACGGGGTTACGGGATATCAATATAACTGGTTCCAAAATGTTTAAGTTCgattttttaaccctttaaaagcCCTAAAAGTGgacgcagagtggtccagcagtctaaaacgctgccactatgatcgggagatcgttGATCgttttgaatcccggtcatgcagcttgccatcagctgccagagccctgagagagcacaattgtcttgctctctgggtgggtggggTCACTACTATaccagcacaaggcgtctgtgagctgatgttttagaaccgagttgctgtgctttccaaACAAGCCGACATTTACACTGTCTGGttaagggcgtgtcagtgtgtctttgctatcgtaacgacaggaaaagtacaccttgcacagctcgaaatacacaaaaggcatgtactcattctcttaattaatcagagGTGTGTTTTGAtcgaaaagtaaaataaactaatcaacATGACACttaccattccctttaagaagcaggtgagctctgactttggcgcattcgtatcttaacagcgcagcgcttttGCATGTTTTAGCAGAGGAAAGTGACCTGCACGTTTATGCTGTGAAAGTGCGTGAGTAGGTCATTTACTGAAACATACAGTCATTTTGTGTGTAACGAGAGGATGTGTTGAGGAAACAgagaacgtctgactgttgactgttgtcagggttttaatcagtcagtggcgcacctgtgttttcctctgctaagatagcaatatgctaGAAATGTATCTAAACACAcattacttccagaccaccacgcccatcgacGCAGATATAGAAAACAAGATGAACGGGACTTATCGAAGTAGTGCAATGCTGTTAATAAGAAGATTGTATCTGCAACTCGTTAGACGCTGGACAGTAGTCCAAACCACATCGATTACTTACTTGCAAGTAACAACAGCTACATACAAGAGAAATGCAGCTCCAGAAGAGACTTTCCTCCACAGATTTCAAAGCCAGAATACAAGAGGTTAACAAGAGGCAGTCCAGATCCGTTTAGAGATTCCTATTACGACCAGCGCCATTAAGAACCCGCACCTAATGACATGCTTCAGTGTAACAGCTCCGGTCTTGTGATTTACCTGCTGTACATTCCGCCTTAGAAATTACCCATGAAGCCTGTAATTACATTTAGCGGAATAGAGCTATTCAtcaaaactgtattaaaagtTTGCAGAGGAGCTATTACAGTGAGATCAGTCTTTACTAAAAGATACGGAGAACATGAAGTATACAGTGCCGCTATATTAGCACTTCTATATACTAGTTGt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132071 True 1855 lncRNA 0.40 2 7724230 7726150

Neighbor

gene id symbol gene type direction distance location
LOC111193393 NA coding upstream 435623 7286540 ~ 7288607 (+)
apoc2 NA coding upstream 634812 7084787 ~ 7089418 (+)
LOC103042602 NA coding upstream 643075 7076615 ~ 7081155 (+)
LOC103043120 LOC108429949 coding upstream 672814 7049201 ~ 7051416 (+)
LOC103046789 LOC108429918,LOC108429917,LOC108257096,LOC108280559,LOC108266725,LOC108266736,LOC108266743 coding upstream 687484 7026293 ~ 7036746 (+)
LOC103045564 LOC107570829 coding downstream 10172 7736322 ~ 7759796 (+)
LOC103045356 ywhabl,LOC107723438,LOC107570839,LOC108265441,LOC107595301,LOC108429958,LOC105896388 coding downstream 121949 7848099 ~ 7866595 (+)
LOC111193438 NA coding downstream 142883 7869033 ~ 7881591 (+)
smg9 smg9,LOC107699520,LOC107595308 coding downstream 165625 7891775 ~ 7900812 (+)
spaca6 NA coding downstream 334813 8060963 ~ 8074397 (+)
G97982 NA non-coding upstream 1921 7721279 ~ 7722309 (+)
G97969 NA non-coding upstream 19408 7684613 ~ 7704822 (+)
G97965 NA non-coding upstream 231828 7491826 ~ 7492402 (+)
G97955 NA non-coding upstream 304609 7416279 ~ 7419621 (+)
G97948 NA non-coding upstream 425955 7295457 ~ 7298275 (+)
G97988 NA non-coding downstream 35035 7761185 ~ 7761824 (+)
G98115 NA non-coding downstream 55408 7781558 ~ 7835204 (+)
G98117 NA non-coding downstream 64873 7791023 ~ 7793327 (+)
G98133 NA non-coding downstream 189369 7915519 ~ 7917730 (+)
G98185 NA non-coding downstream 294424 8020574 ~ 8096610 (+)
G97931 NA other upstream 593421 7127804 ~ 7130809 (+)
G97926 NA other upstream 654101 7068688 ~ 7070129 (+)
apoc1 NA other upstream 658201 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 1042539 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 1159227 6532516 ~ 6565003 (+)
G98636 NA other downstream 1586256 9312406 ~ 9312803 (+)
G98840 NA other downstream 2270054 9996204 ~ 10002046 (+)
G98845 NA other downstream 2334283 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 2446403 10172553 ~ 10178459 (+)
G98967 NA other downstream 2767641 10493791 ~ 10498518 (+)

Expression


Co-expression Network