G98115


Basic Information

Item Value
gene id G98115
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 7781558 ~ 7835204 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU132243
caggctGTCAGTCATGTGTTCTCTAAACTTGAATTTTAGCTCAAAACGTTCGTTTTGGCTCATCAGTGAATCACTGCTTTACAAACAATGATGAAGACtttacaaaatgtataaaatgctaCCATTTAAAAGTGAATGCTGCCTGAACATTCTGCATGCTACAGAATCTACATaagctgtagtttttttttacaaaagcatTAAAAAGCTGCTATCTCAGCTGCTAGCACACAGTAATCTAAACTAAAACTCGCTAATACTTTCCTGCTCAGAGTGACTTAATATGACAGCAGGTCTGCTACAGGATAAACGGCAGTGTGAAAGACAGTCATGAAAGTGAGAAATTCAAGAAGAAGCGGATTCTATCGAGCCTCCCGTCAtcctgatgctgctgctgctgctgatcacaAGGCTGCCAGTGTTGTCGTGTCCCTCTGGTGGCAACGCTCTCGCTCATCTGCTTACTGTTGTTGTAGCTTAATTTCTTCCTTTGGCTGCTTCTGGGTCAGGTCCCACTGGCTTTGACGCCTGGCTTCCTCTGCAGCGGCACTTTCGGCTGATGACAATGAAGATCCCCATGAAGAAGAGCACGGCAGCGAAGATCAAACCCCCGATCCTCACAGATTCATAGTCATAATGAAATTGGCTGTCGTGGTCTTGTAATTCATCCATTGTAGAGGCCAGAGCTGGAACTAAGAAGGAAGAGCAGAGCACTGCTGCTAAAGAAAGCTCCATTATCTCCACTTGGTTCAGCACTTCACTCTCAGTCTATGGAGAAATCTTAATTACTATCGACCCTGCAGCTCCTTCGGCTCCAATCCAGCTCCACACGCAAGACCCCAAACAGTAcagagagcgtgtgtgtgtgtgtgtgtgcgagtgtgtgtgtgtttgtaagagagtgtgtgtggtaaggAGGGGGGTCTGGAGTTGGGGG
>TU132244
caggctGTCAGTCATGTGTTCTCTAAACTTGAATTTTAGCTCAAAACGTTCGTTTTGGCTCATCAGTGAATCACTGCTTTACAAACAATGATGAAGACtttacaaaatgtataaaatgctaCCATTTAAAAGTGAATGCTGCCTGAACATTCTGCATGCTACAGAATCTACATaagctgtagtttttttttacaaaagcatTAAAAAGCTGCTATCTCAGCTGCTAGCACACAGTAATCTAAACTAAAACTCGCTAATACTTTCCTGCTCAGAGTGACTTAATATGACAGCAGGTCTGCTACAGGATAAACGGCAGTGTGAAAGACAGTCATGAAAGTGAGAAATTCAAGAAGAAGCGGATTCTATCGAGCCTCCCGTCAtcctgatgctgctgctgctgctgatcacaAGGCTGCCAGTGTTGTCGTGTCCCTCTGGTGGCAACGCTCTCTGCTCATCTGCTTACTGTTGTTGTAGCTTAATTTCTTCCTTTGGCTGCTTCTGGGTCAGGTCCCACTGGCTTTGACGCCTGGCTTCCTCTGCAGCGGCACTTTCGGCTGATGACAATGAAGATCCCCATGAAGAAGAGCACGGCAGCGAAGATCAAACCCCCGATCCTCACAGATTCATAGTCATAATGAAATTGGCTGTCGTGGTCTGGTGGGAAAGAGAAATGAATAGAGAGACTTGAGTCTAAGCTGGATGAGCCTAAAACCACAATTCACATGACTACTAACAGCAAGTTCACATTCTACAAACACACATCAATCATTAACACACAAACTTCATGAGTTCCAAACCTAACCTAAGTGTTCAAAGACTGCTGAAGAAAACATGTTCTATGTAAAAAGGTCTTATTTTCCAAAAGCAttatcctg
>TU132245
caggctGTCAGTCATGTGTTCTCTAAACTTGAATTTTAGCTCAAAACGTTCGTTTTGGCTCATCAGTGAATCACTGCTTTACAAACAATGATGAAGACtttacaaaatgtataaaatgctaCCATTTAAAAGTGAATGCTGCCTGAACATTCTGCATGCTACAGAATCTACATaagctgtagtttttttttacaaaagcatTAAAAAGCTGCTATCTCAGCTGCTAGCACACAGTAATCTAAACTAAAACTCGCTAATACTTTCCTGCTCAGAGTGACTTAATATGACAGCAGGTCTGCTACAGGATAAACGGCAGTGTGAAAGACAGTCATGAAAGTGAGAAATTCAAGAAGAAGCGGATTCTATCGAGCCTCCCGTCAtcctgatgctgctgctgctgctgatcacaAGGCTGCCAGTGTTGTCGTGTCCCTCTGTTTGCAACTT
>TU132246
caggctGTCAGTCATGTGTTCTCTAAACTTGAATTTTAGCTCAAAACGTTCGTTTTGGCTCATCAGTGAATCACTGCTTTACAAACAATGATGAAGACtttacaaaatgtataaaatgctaCCATTTAAAAGTGAATGCTGCCTGAACATTCTGCATGCTACAGAATCTACATaagctgtagtttttttttacaaaagcatTAAAAAGCTGCTATCTCAGCTGCTAGCACACAGTAATCTAAACTAAAACTCGCTAATACTTTCCTGCTCAGAGTGACTTAATATGACAGCAGGTCTGCTACAGGATAAACGGCAGTGTGAAAGACAGTCATGAAAGTGAGAAATTCAAGAAGAAGCGGATTCTATCGAGCCTCCCGTCAtcctgatgctgctgctgctgctgatcacaAGGCTGCCAGTGTTGTCGTGTCCCTCTGGTGGCAACGCTCTCTGCTCATCTGCTTACTGTTGTTGTAGCTTAATTTCTTCCTTTGGCTGCTTCTGGGTCAGGTCCCACTGGCTTTGACGCCTGGCTTCCTCTGCAGCGGCACTTTCGGCTGATGACAATGAAGATCCCCATGAAGAAGAGCACGGCAGCGAAGATCAAACCCCCGATCCTCACAGATTCATAGTCtgaaaggaggagagagagaaagagaagagcagAGCTGGAGAAAAACGCAAGTtatgaactctgaagctgtgCAGTGATGCCAGGAACAGCCAGTCCTGACACTGACATTAAccttaccctcctggtgtgtctTCTGATTCTGCAAACCGTAATTTCCGGGCTATAAGCCGCTACGTTTTTCACACGTTTTAAACACTGCAGCTTATttaatggttttttttttttttttttcggtttaCGGGCTAACAAGGCTTATGCCTCTAAAATACGCCAGTTTAAGCAAAACCAAGTCCAAATCTAATCCAAGGCTCATCAGGACAAAGAAGTATTTGTATTTACAGATACTTTACATCAGTGTGAATCTGAGTGAAAGGCTTGGATGAAAAGCGGTGagaaataatttaactttacacattttaatataggCCAAATACAACGCACAAATTAATTGCCAACTCGTCCACTAAAATCAACTAGTTTCAGTTTCTAATAAGGACAAAATGAATTTTTATCAACTAAACAGAACCAATTTTAGAAATGTGAAGTACACTTACAGTCTCAAATAGCAGCAAGTTATGCCTTAATTATAggaaatttggtaaaatatgagaaaattacagaaataGTTCAGATTCAACCCCATTTCTTTAGTCATTTATGCCTTGTTTATTATGTtctttaaaatcaaacaaaaaaaattaaattaaaaagtggacactaaaatactaaaatgtttttttttttttttcacaaaatctGTCAACCTGATTAAGCAAAGGCAAAAAGCCACGAGACAAACAAACATCTAAAGAGCCACAGTTCTCACAGCCCTCAGATTAAATCAGTGTTTACGATCGCACTATTAGAAAAGATAATGGgcaaaaatgaaattataactAAGGAAATGATATTGACCCAGTTTTGGAAACATTTGCAATGGGATAAAGAGTTCAAACTGAAAGGTAATGGGATTACGTTTCAGGGCTGTTTCAGGGTCTAGGAAACTacactaaattaataaatgtaactGCCTACctttattcataaagttttaagtaagttcagaaatcaatatttggtggaataatcctggtttttaatcacagtttttttcatgcatcttggcatcatgttctcttcctccaccagtcttacacactgctttaattcaagcagttcagttcggtttgatggcttgtgattatccatcttacgcttgattatattccagaggttttcaatttggtaaaatcaaagaaaatctttaagtgttctcttattttttcagagctataaaTTGCATATGCCACAATTACTCTTAAATTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132243 False 937 lncRNA 0.46 10 7781558 7808099
TU132244 False 878 lncRNA 0.42 6 7781558 7794083
TU132245 False 447 lncRNA 0.40 2 7781558 7835204
TU132246 True 1962 lncRNA 0.37 6 7781558 7793255

Neighbor

gene id symbol gene type direction distance location
LOC103045564 LOC107570829 coding upstream 21762 7736322 ~ 7759796 (+)
LOC111193393 NA coding upstream 492951 7286540 ~ 7288607 (+)
apoc2 NA coding upstream 692140 7084787 ~ 7089418 (+)
LOC103042602 NA coding upstream 700403 7076615 ~ 7081155 (+)
LOC103043120 LOC108429949 coding upstream 730142 7049201 ~ 7051416 (+)
LOC103045356 ywhabl,LOC107723438,LOC107570839,LOC108265441,LOC107595301,LOC108429958,LOC105896388 coding downstream 12895 7848099 ~ 7866595 (+)
LOC111193438 NA coding downstream 33829 7869033 ~ 7881591 (+)
smg9 smg9,LOC107699520,LOC107595308 coding downstream 56571 7891775 ~ 7900812 (+)
spaca6 NA coding downstream 225759 8060963 ~ 8074397 (+)
LOC103021308 LOC108429924,LOC108265369,LOC107699476,LOC107714672,LOC107595349 coding downstream 309760 8144964 ~ 8150644 (+)
G97988 NA non-coding upstream 19734 7761185 ~ 7761824 (+)
G97980 NA non-coding upstream 55408 7724230 ~ 7726150 (+)
G97982 NA non-coding upstream 59249 7721279 ~ 7722309 (+)
G97969 NA non-coding upstream 76736 7684613 ~ 7704822 (+)
G97965 NA non-coding upstream 289156 7491826 ~ 7492402 (+)
G98133 NA non-coding downstream 80315 7915519 ~ 7917730 (+)
G98185 NA non-coding downstream 185370 8020574 ~ 8096610 (+)
G98237 LOC108429911,LOC108429926,LOC108265257 non-coding downstream 402386 8237590 ~ 8244865 (+)
G98240 NA non-coding downstream 412651 8247855 ~ 8257070 (+)
G98234 NA non-coding downstream 441866 8277070 ~ 8277823 (+)
G97931 NA other upstream 650749 7127804 ~ 7130809 (+)
G97926 NA other upstream 711429 7068688 ~ 7070129 (+)
apoc1 NA other upstream 715529 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 1099867 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 1216555 6532516 ~ 6565003 (+)
G98636 NA other downstream 1477202 9312406 ~ 9312803 (+)
G98840 NA other downstream 2161000 9996204 ~ 10002046 (+)
G98845 NA other downstream 2225229 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 2337349 10172553 ~ 10178459 (+)
G98967 NA other downstream 2658587 10493791 ~ 10498518 (+)

Expression


Co-expression Network