G98133


Basic Information

Item Value
gene id G98133
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 7915519 ~ 7917730 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU132266
AGTTTTTCTTCACagctgtaataaaaatgatttagtgtTGACAGTAAAAATACCAGACCTATAATCAACTCTACACTGTGTATTTCACTACTTGAATAAGAAATAATGAGGGGATAACTCACACGCCTGGTTATAGATCAACCAAGCAGCcaactgttacactactgttacTTTTAAGCCCTGCAAAAGTACAGTGGGGCTTGAACTCTTtggaattttctatatttctgcaacaaaaaaaaattgacctaGCTCGATCAAATGAGGTATGAAGCTCATCAGGTTGAAGAAGTTTACTACTAAACCATCTTTGGACTCTACCAATCCACAGTCAGACAGAAAGATCATTTTGGATCATGTCTAATATTTTGTGTGAAAATCAGAAGTTTAGGTTCAATTTATGCAAATCATACAGtgcaataaaaaagtatttgccccaatatagatttatttttgcttaatttgtgcttaaatgttttaggtgatcaaacaaactttaatatacgACGAAGAtaaactgagtaaatataaacaactgtttttaaataataatttcatttaGTAATGGTAAAAAATCTATCtaaaaaatctatccaaaccaacctgattctatgtgaaaaaaaatgaatctattggaacataataaaaataataaagaacacaAAGGCTGTCATCATACTAAAAGTCAAACATGGTGCTGGTAGcatgatggtctggagctgctttgctgcttgaGAACCTGGATAAGTTGCTGTAAATCCTAaaggaaaatatctggccatcagtttgtgaccttaagcttaggcgtacttgggttatgcagcaggacaatgacccgaatCAGAAAATCAAGTCCACCATGGAGtggctcaaataaaaaaaaaaaaaaaaagaaaatgaaggtTTGGAGTGTTCTAgccaaagtctgattgagacgTGGTGGATGATCATAAACCAGgttgtttatgctggaaaactcTTCAgaatgtctgaattaaaaccattctgtaaagaagagagaataaaaaaattcaTCCGCAGAGATATGAAAGACTCATTGCTACTTATTCCCAacacttgattgcagttgtttctGTCAAAGGTGGTACAACCAAGTTATTTTTCAAGTTTGAATAGAATTTTTCACttaatgatattaaaattatcatttaaaactgcattttgtatttactcagagtatatttgtctgatatttgaatgtgtttgttaatctgaaaagtaacataagaaatctgtagggggtaaaaatccttttttcacagcactgtagaaCTTTCTTAAATTCTTTCTCAAATGCTTTAAACCTttttaagcaccactgtatGAAAGAGGATGTTATTTCTACATGTTTTACTTgatttgcataaaaaataaagctgaagaaaaactttttttatgctGGACTGCTAAACACAGCTAAAAATTTTCTTTGTACACATTGATGGACAGCTGATGGACAGTGTTGTTCTCCGagatctgtgtttgtgtttttactgtgtagaaaaagctgaaatgtgGAAAAATGAGTGAAAGTTTTGATTCATTCGTAATAAAACACTTTTCCTATGCTAGAAAGTGACAATAAAATTGATCCTGACCAGAGTTTGATTAGGTGCATTTGTTCTGGCAATACAGGAATAGAGGAATCAGCTGGATTCAGACTGGATTGTATCTCCAATTTACTACGATTGATATATTACGATTCCACTGGTTTCAAAACAGCACTTACACTttgaccgttttttttttttaaagcaatactGAAAATTGCATAATTAATTACACAGTCTATTAGTCCTCATTTTAACCCCAAAGGATTTCATACCTTTAAAACCACGGTCACTGAAGCTGTTCTCCACTTTTCCCTTTGTTTTCAGTGTCgcagataaacataaatatcGTCATAAATACATTAGATTTgtccttcttcttcttcttcttcttatccCGCCCCTCAGTGAGGTACAGGGACGTTAGTTAATCTTTCTCTGTGCAGAAAGTCTGTGCAGCTCTTGAGGTCCGTGGAAACAGAAACCTGTGCGTGTATCATGGAAGACTTCCACTAACACTGCACTGTAAGTGGCTCGTGCAGTTGTGATCGGACGGCCGTCTGAGGACAAGGAGAGGACGGTGGCGTCCGCTGGGGCGTCTTCAGAGGGAAATTCAC

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132266 True 2188 lncRNA 0.35 2 7915519 7917730

Neighbor

gene id symbol gene type direction distance location
smg9 smg9,LOC107699520,LOC107595308 coding upstream 14707 7891775 ~ 7900812 (+)
LOC111193438 NA coding upstream 33928 7869033 ~ 7881591 (+)
LOC103045356 ywhabl,LOC107723438,LOC107570839,LOC108265441,LOC107595301,LOC108429958,LOC105896388 coding upstream 48924 7848099 ~ 7866595 (+)
LOC103045564 LOC107570829 coding upstream 155723 7736322 ~ 7759796 (+)
LOC111193393 NA coding upstream 626912 7286540 ~ 7288607 (+)
spaca6 NA coding downstream 143233 8060963 ~ 8074397 (+)
LOC103021308 LOC108429924,LOC108265369,LOC107699476,LOC107714672,LOC107595349 coding downstream 227234 8144964 ~ 8150644 (+)
LOC103023078 NA coding downstream 235729 8153459 ~ 8168108 (+)
LOC103022775 NA coding downstream 255825 8173555 ~ 8197686 (+)
LOC103021850 NA coding downstream 282807 8200537 ~ 8213872 (+)
G98115 NA non-coding upstream 80315 7781558 ~ 7835204 (+)
G98117 NA non-coding upstream 122192 7791023 ~ 7793327 (+)
G97988 NA non-coding upstream 153695 7761185 ~ 7761824 (+)
G97980 NA non-coding upstream 189369 7724230 ~ 7726150 (+)
G97982 NA non-coding upstream 193210 7721279 ~ 7722309 (+)
G98185 NA non-coding downstream 102844 8020574 ~ 8096610 (+)
G98237 LOC108429911,LOC108429926,LOC108265257 non-coding downstream 319860 8237590 ~ 8244865 (+)
G98240 NA non-coding downstream 330125 8247855 ~ 8257070 (+)
G98234 NA non-coding downstream 359340 8277070 ~ 8277823 (+)
G98232 NA non-coding downstream 360274 8278004 ~ 8279202 (+)
G97931 NA other upstream 784710 7127804 ~ 7130809 (+)
G97926 NA other upstream 845390 7068688 ~ 7070129 (+)
apoc1 NA other upstream 849490 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 1233828 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 1350516 6532516 ~ 6565003 (+)
G98636 NA other downstream 1394676 9312406 ~ 9312803 (+)
G98840 NA other downstream 2078474 9996204 ~ 10002046 (+)
G98845 NA other downstream 2142703 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 2254823 10172553 ~ 10178459 (+)
G98967 NA other downstream 2576061 10493791 ~ 10498518 (+)

Expression


Co-expression Network