G98500


Basic Information

Item Value
gene id G98500
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 9139334 ~ 9140580 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU132802
TCAGAAAATACACAcggtttattgttttaataaaatacaaacattctgtttacatcccataatatctTCCACCTTTAAAATACACTTCCAACGTCAattaaactgatataaaaaGTGTAAGTATCGGTACAGAATATCAGGACAGTGCACAGTCCAACAAGGAACTGATTTAAAGGTCTGATATCACTGAGAACTGAAACATGAACTGAAAATGAAAACGGAGTGTGATGTTTTACATAAACTCTGGTCAAAAGTGAAGCATTTATTGCCCGCCCAGACAGTACACATATGGAAATTACTGATTGTGAATGAATCTTGTTTTTGATGTCACAAAACCAACACagacacatatacagtatatatactgtatagttaTTGGTGTTTACTTTAGTACCTctgggtggttgctgaggtattttgtgttattttagagTGTCTATAAGCAGTTCATATGCTAGAGAGTCAGTGGTACTGGTGGTaattgctagggtgttgctgtggtactaGTGGTGGTTGCAGGCTGTTGCTGCAGTACTGGAGGTGTTGCTAGGGTTTCACTGGGATACTGGAGGTGGttactagatggttgctatgctgcTCCTGTGATATTGGGAaaggttgctagggtgttgctgtggtactgGGGTTTCTAGTTCCTAGGGTGGTGCTTATGTCGGCTTGTAAGGTACATGATGTAGTACCTCTATATGGTTCATGTAGTACCTCTATGTGGTTGATATAGTACctctatgtggttgctgtggtatataAGTTGACAAGTGGAATGCCCATAACTTAAGGTTTTATTCTTTTTCTTTGGTTTATTAATGATTGCCAGATGATTCCAAGGCTGCTATTAGGGAATTGCACAGCATAACTagaaggtggttgctgtggtatcctagGAGCATTCAAAAAAGGTCTGAGTgtctttaaactaaataaagtttaacaatattttcttttatctcACACATTCAGTCTCACTCACACAAACATTATACAAAGTGTTGGATCCTGGACAACctgaacagccaatcagaatagcCCTCATTTACATACAggactgtgcaaaagttttaggcaccaaagcaaattacacggatctatttatctcagcaatacaagtgtttttacctgaaaaaaggaCCACATATGATCTGAccagatgcaaataaatattaatacagtaaaacgtaacaaatatttctcattttaactaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132802 True 1224 lncRNA 0.38 2 9139334 9140580

Neighbor

gene id symbol gene type direction distance location
LOC103035505 LOC108411721,LOC107658752 coding upstream 59096 9047865 ~ 9080238 (+)
ccdc107 LOC107555866 coding upstream 105033 9024387 ~ 9034301 (+)
krr1 krr1 coding upstream 212826 8916576 ~ 8926508 (+)
LOC111193444 NA coding upstream 243737 8862740 ~ 8895597 (+)
LOC103033147 phlda1 coding upstream 318145 8818913 ~ 8821189 (+)
cpsf6 cpsf6,LOC107729149 coding downstream 39205 9179785 ~ 9195720 (+)
LOC103042523 far1,LOC107590516,LOC103366393 coding downstream 74272 9214852 ~ 9268400 (+)
LOC111193395 NA coding downstream 222488 9363068 ~ 9365903 (+)
LOC103028562 ephb6,LOC108432347,LOC107724759,LOC107672963,LOC107549482,LOC107744289,LOC108270687 coding downstream 264240 9404820 ~ 9458769 (+)
LOC103028240 LOC108432345 coding downstream 332817 9473397 ~ 9508318 (+)
G98498 NA non-coding upstream 42451 9086633 ~ 9096883 (+)
G98496 NA non-coding upstream 52751 9083589 ~ 9086583 (+)
G98497 NA non-coding upstream 55035 9083769 ~ 9084299 (+)
G98483 NA non-coding upstream 174165 8963313 ~ 8965169 (+)
G98462 NA non-coding upstream 229049 8910008 ~ 8910285 (+)
G98508 yeats4,LOC107555875,LOC107590554 non-coding downstream 37926 9178506 ~ 9179318 (+)
G98630 NA non-coding downstream 147060 9287640 ~ 9292655 (+)
G98635 NA non-coding downstream 168678 9309258 ~ 9309691 (+)
LOC111193403 NA non-coding downstream 188327 9328907 ~ 9338005 (+)
G98657 NA non-coding downstream 234276 9374856 ~ 9375545 (+)
G97931 NA other upstream 2008525 7127804 ~ 7130809 (+)
G97926 NA other upstream 2069205 7068688 ~ 7070129 (+)
apoc1 NA other upstream 2073305 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 2457643 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 2574331 6532516 ~ 6565003 (+)
G98636 NA other downstream 171826 9312406 ~ 9312803 (+)
G98840 NA other downstream 855624 9996204 ~ 10002046 (+)
G98845 NA other downstream 919853 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 1031973 10172553 ~ 10178459 (+)
G98967 NA other downstream 1353211 10493791 ~ 10498518 (+)

Expression


Co-expression Network