decr1 (decr1,LOC107580031,LOC107756153,LOC107704989,LOC107705494)


Basic Information

Item Value
gene id decr1
gene name decr1,LOC107580031,LOC107756153,LOC107704989,LOC107705494
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 4201963 ~ 4225743 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228878.3
ataaaagtcctcacagctgctgctgtttggtgtcgctgctgtttggtttggtgtCGCTGGTTCTGGTCAGGTGGTGATTTTAGGACAGTATGGCGCTGCTCACCAGGTTCACCTGCAGGGCTCAGCCGCTGCAACGCTGTATCTGTCAGACCCGGTTGTTTGGAAATGGAACAGCTGCCTTGTTGCAGAGCAGTGAAAAAACTGCTCCACAGTCCCGCTTCTTTCCCATCTGTGAACAGCCGATGCTGCTGCCCGGGAGTTTTAAAAACAAGGTGGCCTTCATCACTGGAGGAGGGACAGGGCTGGGAAAGGGCATGACCACCACGCTGTCTTCTCTCGGTGCGGAGTGTGTTATAGCCAGCAGAAGTTTGGATGTTTTGAAGCAAACTGCAGAGGAAATCTCAAAGAAGACTGGCAATAAGGTTCATGCTGTGCAGTGTAATGTGAGGGACCCAGCCTCTGTAAAGGCTGCTGTGGACCAGGTGGTCAATGATGTTGGACTCCCTGATGTGGTGATCAACAATGCTGCAGGAAATTTCATCTCCCCCACTGAACGGCTCTCTGCCAATGCCTGGAAGACCATAACCGACATTGTTCTGAACGGCACAGCTCTCGTCACCCTCGACATTGGGAAGCGTCTCATCAAAGCGGAGAAAGGTGCAGCGTTTTTGGCCATCACCACAATCTATGCTGAGAGTGGCTCTGGGTTTGTTGTGCCCAGTGCATCTGCCAAGGCAGGAGTTGATGCCCTTTGCAAGTCTCTGGCAGCCGAGTGGGGAAGATATGGCATGAGATTCAATGTTATTCAGCCGGGGCCAATCAAAACCAAGGGGGCTTTCAGCCGCTTGGATCCCACTGGCAAGTTCGAGGAGACGATGACTGATAGGATACCGGTGGGTCGACTCGGTACTGCAGGAGAGATTGCCAACCTAGCTGCCTACCTCTGCAGTGACTATGCCAGCTGGGTGTCGGGTGCGgTCATCAGAATGGATGGTGGTGAATATGTGCTCATGTCCGGTGAATTTAATGAAATGAGAGCCGTCACAAAAGAGCAGTGGGATGTGATGGAAGACCTGATCAGGAAAACAAAGGGATCGTAAAGGCTCTTAAGAATGGAGCTGAGTTCAGTGCCTGTGAACACATTTGATATACATACGTCTCCACATCAGTTCATTTCATTCATGCTTATTCCACGCAAGATGACGATCACATGATTAAACGTATATCGAACAAGCTAACAGTACTCTCTCAATCAGCATTATGTTGGGAaactttttgtattttggtaCTTTAGGTCTCATTTATATGGTTGTGTATTTTTGCCTGCTGTTTCTCAGACTGTATTTGAAAATGGCCTTTTTTAGAAAACTTAGTTCTGAAAGTGCTTagttaaatttaattataattaagatTAGCAAGTTTAGTTTGATAGATGATTTAAAGACTTGCACTGAATGTAGTTTGTAGGAGAACTGTCAAATCTAATGCTGAAAATGTCTCTACTTTTCGTATCTACATGTAGAAAGTGAAATGTAAATAAACGTTTAGAGAGTTATgaatgtaaaatgaataaaatgcaaatatttcTA
>XM_022674136.1
ataaaagtcctcacagctgctgctgtttggtgtcgctgctgtttggtttggtgtCGCTGGTTCTGGTCAGGTGGTGATTTTAGGACAGTATGGCGCTGCTCACCAGGTTCACCTGCAGGGCTCAGCCGCTGCAACGCTGTATCTGTCAGACCCGGTTGTTTGGAAATGGAACAGCTGCCTTGTTGCAGAGCAGTGAAAAAACTGCTCCACAGTCCCGCTTCTTTCCCATCTGTGAACAGCCGATGCTGCTGCCCGGGAGTTTTAAAAACAAGGTGGCCTTCATCACTGGAGGAGGGACAGGGCTGGGAAAGGGCATGACCACCACGCTGTCTTCTCTCGGTGCGGAGTGTGTTATAGCCAGCAGAAGTTTGGATGTTTTGAAGCAAACTGCAGAGGAAATCTCAAAGAAGACTGGCAATAAGGTTCATGCTGTGCAGTGTAATGTGAGGGACCCAGCCTCTGTAAAGGCTGCTGTGGACCAGGTGGTCAATGATGTTGGACTCCCTGATGTGGTGATCAACAATGCTGCAGGAAATTTCATCTCCCCCACTGAACGGCTCTCTGCCAATGCCTGGAAGACCATAACCGACATTGTTCTGAACGGCACAGCTCTCGTCACCCTCGACATTGGGAAGCGTCTCATCAAAGCGGAGAAAGGTGCAGCGTTTTTGGCCATCACCACAATCTATGCTGAGAGTGGCTCTGGGTTTGTTGTGCCCAGTGCATCTGCCAAGGCAGGAGTTGATGCCCTTTGCAAGTCTCTGGCAGCCGAGTGGGGAAGATATGGCATGAGATTCAATGTTATTCAGCCGGGGCCAATCAAAACCAAGGGGGCTTTCAGCCGCTTGGATCCCACTGGCAAGTTCGAGGAGACGATGACTGATAGGATACCGGTGGGTCGACTCGGTACTGCAGGAGAGATTGCCAACCTAGCTGCCTACCTCTGCAGTGACTATGCCAGCTGGGTGTCGGGTGCGgTCATCAGAATGGATGGTGGTGAATATGTGCTCATGTCCGGTGAATTTAATGAAATGAGAGCCGTCACAAAAGAGCAGTGGGATGTGATGGAAGACCTGATCAGGAAAACAAAGGGATCGTAAAGGCTCTTAAGAATGGAGCTGAGTTCAGTGCCTaagcaataaatacataatcaaATATTGG
>XM_022674137.1
ctcctcgacctgaacatgaacttcagaccagctgtttgctcttcacgccagcaaaagatgctccacTTGTTTGGAAATGGAACAGCTGCCTTGTTGCAGAGCAGTGAAAAAACTGCTCCACAGTCCCGCTTCTTTCCCATCTGTGAACAGCCGATGCTGCTGCCCGGGAGTTTTAAAAACAAGGTGGCCTTCATCACTGGAGGAGGGACAGGGCTGGGAAAGGGCATGACCACCACGCTGTCTTCTCTCGGTGCGGAGTGTGTTATAGCCAGCAGAAGTTTGGATGTTTTGAAGCAAACTGCAGAGGAAATCTCAAAGAAGACTGGCAATAAGGTTCATGCTGTGCAGTGTAATGTGAGGGACCCAGCCTCTGTAAAGGCTGCTGTGGACCAGGTGGTCAATGATGTTGGACTCCCTGATGTGGTGATCAACAATGCTGCAGGAAATTTCATCTCCCCCACTGAACGGCTCTCTGCCAATGCCTGGAAGACCATAACCGACATTGTTCTGAACGGCACAGCTCTCGTCACCCTCGACATTGGGAAGCGTCTCATCAAAGCGGAGAAAGGTGCAGCGTTTTTGGCCATCACCACAATCTATGCTGAGAGTGGCTCTGGGTTTGTTGTGCCCAGTGCATCTGCCAAGGCAGGAGTTGATGCCCTTTGCAAGTCTCTGGCAGCCGAGTGGGGAAGATATGGCATGAGATTCAATGTTATTCAGCCGGGGCCAATCAAAACCAAGGGGGCTTTCAGCCGCTTGGATCCCACTGGCAAGTTCGAGGAGACGATGACTGATAGGATACCGGTGGGTCGACTCGGTACTGCAGGAGAGATTGCCAACCTAGCTGCCTACCTCTGCAGTGACTATGCCAGCTGGGTGTCGGGTGCGgTCATCAGAATGGATGGTGGTGAATATGTGCTCATGTCCGGTGAATTTAATGAAATGAGAGCCGTCACAAAAGAGCAGTGGGATGTGATGGAAGACCTGATCAGGAAAACAAAGGGATCGTAAAGGCTCTTAAGAATGGAGCTGAGTTCAGTGCCTGTGAACACATTTGATATACATACGTCTCCACATCAGTTCATTTCATTCATGCTTATTCCACGCAAGATGACGATCACATGATTAAACGTATATCGAACAAGCTAACAGTACTCTCTCAATCAGCATTATGTTGGGAaactttttgtattttggtaCTTTAGGTCTCATTTATATGGTTGTGTATTTTTGCCTGCTGTTTCTCAGACTGTATTTGAAAATGGCCTTTTTTAGAAAACTTAGTTCTGAAAGTGCTTagttaaatttaattataattaagatTAGCAAGTTTAGTTTGATAGATGATTTAAAGACTTGCACTGAATGTAGTTTGTAGGAGAACTGTCAAATCTAATGCTGAAAATGTCTCTACTTTTCGTATCTACATGTAGAAAGTGAAATGTAAATAAACGTTTAGAGAGTTATgaatgtaaaatgaataaaatgcaaatatttcTA

Function

symbol description
decr1 Orthologous to human DECR1 (2,4-dienoyl-CoA reductase 1).

NR:

description
2,4-dienoyl-CoA reductase, mitochondrial-like isoform X1

GO: NA

KEGG:

id description
K13236 DECR1; 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing], mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228878.3 True 1589 mRNA 0.46 10 4201963 4225682
XM_022674136.1 False 1161 mRNA 0.51 11 4201963 4225743
XM_022674137.1 False 1500 mRNA 0.45 10 4208229 4225682

Neighbor

gene id symbol gene type direction distance location
LOC103035111 NA coding upstream 7097 4170446 ~ 4194866 (+)
tmem158 tmem158 coding upstream 37626 4161874 ~ 4164337 (+)
LOC103038805 NA coding upstream 276391 3923661 ~ 3925572 (+)
e2f3 e2f3,LOC108429255 coding upstream 286244 3901689 ~ 3915719 (+)
LOC103037205 tmem65,LOC108429253,LOC108271490,LOC106922370,LOC103135153,LOC106953768 coding upstream 342091 3759945 ~ 3859872 (+)
LOC103036464 kiaa0319 coding downstream 171348 4397091 ~ 4421912 (+)
kcnv1 kcnv1,si:dkey-201i6.2,LOC107666889,LOC107717377,LOC107668317 coding downstream 233809 4459552 ~ 4488435 (+)
LOC103036163 si:dkey-22o22.2,LOC108437325,LOC108272818,LOC107666790,LOC107717379,LOC107713796,LOC107668308,LOC107592533,LOC107600533 coding downstream 430759 4656502 ~ 4884316 (+)
LOC111193422 NA coding downstream 722640 4948383 ~ 4954529 (+)
plekhf2 plekhf2,LOC107666819,LOC107600513,LOC107668314 coding downstream 767234 4992977 ~ 5029269 (+)
G97035 LOC103034794,LOC108437355,LOC104937918 non-coding upstream 4026 4195948 ~ 4197937 (+)
G97000 NA non-coding upstream 6187 3932811 ~ 4195776 (+)
G97029 NA non-coding upstream 36064 4096134 ~ 4165899 (+)
LOC111193419 NA non-coding upstream 447193 3753172 ~ 3754770 (+)
LOC111193420 NA non-coding upstream 449266 3751492 ~ 3752697 (+)
G97038 NA non-coding downstream 197 4225940 ~ 4287454 (+)
G97042 NA non-coding downstream 16787 4242530 ~ 4256999 (+)
G97048 pnp4b,LOC108437351,LOC108272756,LOC106605471 non-coding downstream 64307 4290050 ~ 4290894 (+)
G97053 NA non-coding downstream 103275 4329018 ~ 4330306 (+)
G97067 NA non-coding downstream 198911 4424654 ~ 4495490 (+)
LOC111193421 mboat1 other upstream 303044 3864990 ~ 3898919 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other upstream 763237 3389051 ~ 3438726 (+)
LOC103040575 ube2i,LOC107677193 other upstream 3393389 799224 ~ 808574 (+)
ndufaf6 ndufaf6 other downstream 739727 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 1581825 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 2054579 6280322 ~ 6382717 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other downstream 2306773 6532516 ~ 6565003 (+)
adar adar,LOC107723500 other downstream 2428607 6654350 ~ 6681691 (+)

Expression


Co-expression Network