LOC103043120 (LOC108429949)


Basic Information

Item Value
gene id LOC103043120
gene name LOC108429949
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 7049201 ~ 7051416 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231144.3
ATCTCACACACAGCAAACCAGACTTCTCAGGTGTGCTTGTCTGTCTACCAACATGAGGGCTGTAGCTGTGGTTCTTGCTCTGGCGGTCATTGCTGGCTGCCATGCTCGCGCCGTGCCCCAGGCCGATGAGCCTAAGGCCAAATGGGAAGAGACGGTGGACCGCTTCTGGGAATACGTCTCTGAGCTCAACACCCATGCTGATGGTGTGGTGAAGAACATCAAGTCCTCCCAGCTCACCAGGGAACTTGATACTCTGATCACAGACACCATGTCTGAGCTGAACGTGTACAGAGAGGACCTCGAGACCAAACTGGGACCCTACGCCACAGACGCCAGCGGCCAGCTGAAGCAGGACCTGGAGCTGCTGACCAGCAAGCTGCAGACCGACATGGTTGACGCCAAGGAGCGTTCCACCCAGTACCTGCAAGAGCTGAAGACCATGATGGAGCAGAACGCCGATGACGTGAAGAACCGCATCAACACCTACACCCGCAAGCTGAAGAAGCGTCTGGGCAAGGACACCGAGGAGATCCGCAAcacCATGACGACTTACCTGGGCGAGCTGCAGTCTCGCGCCTCCCAGAACGCTGGAGCTATGAAGGACCGCTTCGAGCCCTACGTGCAACAGGCTCACCAGGGAGTCAGCCAGAAGCTGGGCACCATCAGCGACGTGCTGCAGAGCCAGGCCCAGGGAGTGAGCCAGCAGCTCGAGGCACAGGCCGGCGTACTGAAggagcagctggagcagaccGCCGAAACCCTCCGCACCTCTCTGGAGGGCCGCATCGACGAGCTGACCAGCCTCCTCAACCCCTACACTGATAAGATCCGGGAACAGCTGCAGAACGTCATGGAAAAGATCAAGGAGGCCACAGCTGCTCTCCCCACACCGGCATAAAGTAGCTGCACCAAATGCAATGAGAAAgaaatattcatttttgttACTGAATCTATATACATATTTCACTGTCTGGGCAGGGAAAGAGCAAGGGCGAGAACTACACACAGCTGAACAAGTCTTTTAACTTATCGttatcatcttttttgtcaAAAGTGAACTACTGtttaatagcaataataataataataataataataataataataatcaccacCTCGATTGTTCTCTCAGTATTAAGTATTAATCCACTGTCATGTCATGTTCTTTATCGTGCAATAGGGCATTGTTATAACTGCCTTAGGAACTGCATTCTTCCTCAAGAGTCTCACTTCCCAAATTGTTCAATCTGTCCACCTCAAATTTGTTTCATGGCGTTCTTGTTTTCTTGTGCAAACACAAAAGAGGCAGTTCAGTAAACTTCGGGCCAAATTGGcaccacattttttaaaaagtactgtttTAAATACAAAGAGATGTCCACCATTTCAACAGCTGAACAACCGTGACACAACCTGATGCAACCAGAGAATGTCGATGCAAGTTATTTTtttgaactgatttttttttgtgcactgCCGTTTTTTTGAACATGTTTTCAATAAATGTGCTTAACGGTTCATAACACA

Function

NR:

description
PREDICTED: apolipoprotein Eb-like

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG:

id description
K04524 APOE; apolipoprotein E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231144.3 True 1527 mRNA 0.49 5 7049201 7051416

Neighbor

gene id symbol gene type direction distance location
LOC103046789 LOC108429918,LOC108429917,LOC108257096,LOC108280559,LOC108266725,LOC108266736,LOC108266743 coding upstream 12455 7026293 ~ 7036746 (+)
gtpbp10 gtpbp10 coding upstream 97275 6935539 ~ 6951926 (+)
nbn NA coding upstream 143360 6885569 ~ 6905841 (+)
fam189b fam189b coding upstream 169830 6861598 ~ 6879371 (+)
rab13 rab13,LOC107723501,LOC107714709 coding upstream 188377 6852783 ~ 6860824 (+)
LOC103042602 NA coding downstream 25199 7076615 ~ 7081155 (+)
apoc2 NA coding downstream 33371 7084787 ~ 7089418 (+)
LOC111193393 NA coding downstream 235124 7286540 ~ 7288607 (+)
LOC103045564 LOC107570829 coding downstream 684906 7736322 ~ 7759796 (+)
LOC103045356 ywhabl,LOC107723438,LOC107570839,LOC108265441,LOC107595301,LOC108429958,LOC105896388 coding downstream 796683 7848099 ~ 7866595 (+)
G97901 NA non-coding upstream 164626 6883243 ~ 6884575 (+)
G97884 LOC103044954,LOC107599504,LOC103388254,LOC107589412,LOC101077558,LOC103356523,LOC108429942 non-coding upstream 198438 6774278 ~ 6850763 (+)
G97870 NA non-coding upstream 221622 6824918 ~ 6827579 (+)
G97896 NA non-coding upstream 236841 6811521 ~ 6812360 (+)
G97883 NA non-coding upstream 292129 6756716 ~ 6757072 (+)
G97930 NA non-coding downstream 66194 7117610 ~ 7125636 (+)
G97929 NA non-coding downstream 68407 7119823 ~ 7125239 (+)
G97938 NA non-coding downstream 167816 7219232 ~ 7219527 (+)
G97940 NA non-coding downstream 188115 7239531 ~ 7239765 (+)
G97942 rps19,LOC107657656,LOC100689943 non-coding downstream 208575 7259991 ~ 7280844 (+)
adar adar,LOC107723500 other upstream 367510 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 484198 6532516 ~ 6565003 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other upstream 666484 6280322 ~ 6382717 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other upstream 1198671 5807568 ~ 5850530 (+)
ndufaf6 ndufaf6 other upstream 2068254 4965470 ~ 4980947 (+)
apoc1 NA other downstream 10716 7062132 ~ 7066029 (+)
G97926 NA other downstream 17272 7068688 ~ 7070129 (+)
G97931 NA other downstream 76388 7127804 ~ 7130809 (+)
G98636 NA other downstream 2260990 9312406 ~ 9312803 (+)
G98840 NA other downstream 2944788 9996204 ~ 10002046 (+)

Expression


Co-expression Network