rab13 (rab13,LOC107723501,LOC107714709)


Basic Information

Item Value
gene id rab13
gene name rab13,LOC107723501,LOC107714709
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 6852783 ~ 6860824 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231149.3
CTCCCTCTAATGGAGagtgctctgctgctgctgctgcaccctttctctctctctctacgtaAGCCTTCGGGAACTCGGGGGGAGTTTTTGGGAGAGACCGTTCTCCGCATGGATGAATGTAAGCCCTTCTGTGGAGGGGAAAACTAGCAGGACTGCAGCTGAGATGACGAGGAAAACTGGCGGAAACTGAGTGAAAGTGGAACAGAAGGGAGTCTGTGAGAATCAGGAGCTGCGTGACTTTGGTTTAGTGAAAGTTTTTAGCTgctttgtttcttcttttctttactcGGACTGGGACTGACTGACTGGGAGCAGCGAGAGGAGCTTAGCTGTCTGTCTGACCGGCTGGAGAGAGAGTTAGTGGAGAACAAAACGTTTAAAAGCCTTAAATGGACGGTAAAGTGGCCTGAGGTGGAAGTGTGAGGGTCTGAATCTGACTGTGTTCGAGGGGAGAAGAGAAACTTGGCAGAGATTTCAGTGACAACAATCTGTTcagagggaaaaaaatacacGGACAGAAAGAACTATGGCAAAGAAATACGACTTCCTTTTCAAGTTACTGCTTATTGGAGACAGTGGAGTTGGTAAAACATGTCTGATTATCCGTTTTGCAGAGGATAACTTCAACTCGACCTACATATCTACTATTGGTATCGACTTTAAGGTGAAGACCATTGAGGTTGAAGGAAAGAAGGTCAAGCTGCAAGTCTGGGACACAGCAGGACAGGAGAGGTTTAAGACCATCACTACAGCTTACTACAGAGGAGCTATGGGCATTATCCTTGTATATGACATAACTGATGAGAAATCATTTGAGAATATTCAAAACTGGATGAAGAGCATCAAGGAGAATGCATCAGCTGGAGTGAGTCGGATGTTGCTGGGAAACAAGTGCGACATAGAAGCTAAGAGGAAGGTTTCAAAGGAAATGGGTGAGAAGCTTGCAAAGGACCATGGGATTCGATTCTTCGAGACGAGTGCAAAGTCAAGCATCAATGTTGAAGAGtcctTTATGTCTCTGGCTCGAGACATTTTGCTGAAATCAGGCAAGAAATCGGGTCCGACAGGTCGTGAGGTCAAacttaccaccaccaccaccccggAGAAAAAGTCCTCCAAGTGTCTTCTGCTTTAGACCCCTCGCTGGCTGACGGAAACTGACCTCATGACCTGAAGcgcacacataaacataaacatacacGTACACTCCTACGATGCAGCAGTATTATACAACAAGGGATTTTAAAACGTGAGCATAGGATATACATGAGGAAATTGCCTGGGATGGTAATACCACAATGCAGGAAAGGACCTATTTtgcaaagaaataaaagaaaaaagattttttacaacttgataaatatatttttttgttttgtatcacATTCCATAGTTTGGTTTAAGTGGAGGGTTAGGGTTAGCGTATGATTACAGCTGttacactatttttatattgcAGCTGTACTTAAAATAATGTGGAGAATGGGAGAATTTGCacacattgctgtttttttttttttttaaagctgcagTTAAAGTGTTGTGTGCAATACCATGTATTTTGCAGTGCTGGATTTTCTATATGAAGATATGAGTCAGTTAAAGACTGATTATAAAACTAATCAGTTTGTTAAAACTCAGAAGCAGTAAGTGATGATTTGTGTGGCCTGTGCAGGTGATCAGATGGTAGGGtggtgaaagtgagagagagagttacagtgGTTATGGAAATGAAGGATACAGAGAGGAAATATTGTGTTCTAGAAAGTTGATAAGTACGTAGGTGAGTACGTAGAAAGTACCAGAGTACCTCTGGGAGAAACTGACTTGTGGAAAGAATCGTGccttttgtttttatgtaattaaGGCAAGCCCCTCCCCTTTCTTGCACAGCACTCTTTAGTCTCTGCCCCCAAATGTCCTCCTTCACTCTGTCCTTTCAGAGAGCATATGAAAAATTCTGTcatgtatgtattttaagcTGCTTTGAATAAACTATAAAATGAGcaaag

Function

symbol description
rab13 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within angiogenesis. Predicted to be located in several cellular components, including cytoplasmic vesicle; lateral plasma membrane; and trans-Golgi network. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in notochord; pectoral fin musculature; vein; and ventral mesoderm. Orthologous to human RAB13 (RAB13, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-13

GO:

id name namespace
GO:0035767 endothelial cell chemotaxis biological_process
GO:0032869 cellular response to insulin stimulus biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0070830 bicellular tight junction assembly biological_process
GO:0001525 angiogenesis biological_process
GO:0044795 trans-Golgi network to recycling endosome transport biological_process
GO:0010737 protein kinase A signaling biological_process
GO:0015031 protein transport biological_process
GO:0032456 endocytic recycling biological_process
GO:1902463 protein localization to cell leading edge biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0031175 neuron projection development biological_process
GO:0032593 insulin-responsive compartment cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0043005 neuron projection cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030027 lamellipodium cellular_component
GO:0016328 lateral plasma membrane cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K06109 RAB13; Ras-related protein Rab-13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231149.3 True 2012 mRNA 0.42 8 6852783 6860824

Neighbor

gene id symbol gene type direction distance location
LOC103021742 kcnn3,LOC108280396,LOC107595057,LOC107699550,LOC107723559,LOC107657645,LOC107714686 coding upstream 29741 6712421 ~ 6823042 (+)
snx27 snx27,snx27b,LOC108429939,LOC107699551,LOC107657641,LOC107714694 coding upstream 221047 6611718 ~ 6631736 (+)
LOC103023101 s10i,LOC100304668,LOC107582076,LOC106606010,LOC107657639 coding upstream 244829 6605504 ~ 6607954 (+)
LOC103022085 NA coding upstream 279033 6558877 ~ 6573750 (+)
LOC111193433 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143 coding upstream 289247 6558865 ~ 6563536 (+)
fam189b fam189b coding downstream 774 6861598 ~ 6879371 (+)
nbn NA coding downstream 24745 6885569 ~ 6905841 (+)
gtpbp10 gtpbp10 coding downstream 74715 6935539 ~ 6951926 (+)
LOC103046789 LOC108429918,LOC108429917,LOC108257096,LOC108280559,LOC108266725,LOC108266736,LOC108266743 coding downstream 165469 7026293 ~ 7036746 (+)
LOC103043120 LOC108429949 coding downstream 188377 7049201 ~ 7051416 (+)
G97884 LOC103044954,LOC107599504,LOC103388254,LOC107589412,LOC101077558,LOC103356523,LOC108429942 non-coding upstream 2020 6774278 ~ 6850763 (+)
G97870 NA non-coding upstream 25204 6824918 ~ 6827579 (+)
G97896 NA non-coding upstream 40423 6811521 ~ 6812360 (+)
G97883 NA non-coding upstream 95711 6756716 ~ 6757072 (+)
G97882 NA non-coding upstream 96722 6754741 ~ 6756061 (+)
G97901 NA non-coding downstream 22419 6883243 ~ 6884575 (+)
G97930 NA non-coding downstream 256786 7117610 ~ 7125636 (+)
G97929 NA non-coding downstream 258999 7119823 ~ 7125239 (+)
G97938 NA non-coding downstream 358408 7219232 ~ 7219527 (+)
G97940 NA non-coding downstream 378707 7239531 ~ 7239765 (+)
adar adar,LOC107723500 other upstream 171092 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 287780 6532516 ~ 6565003 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other upstream 470066 6280322 ~ 6382717 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other upstream 1002253 5807568 ~ 5850530 (+)
ndufaf6 ndufaf6 other upstream 1871836 4965470 ~ 4980947 (+)
apoc1 NA other downstream 201308 7062132 ~ 7066029 (+)
G97926 NA other downstream 207864 7068688 ~ 7070129 (+)
G97931 NA other downstream 266980 7127804 ~ 7130809 (+)
G98636 NA other downstream 2451582 9312406 ~ 9312803 (+)
G98840 NA other downstream 3135380 9996204 ~ 10002046 (+)

Expression


Co-expression Network