e2f3 (e2f3,LOC108429255)


Basic Information

Item Value
gene id e2f3
gene name e2f3,LOC108429255
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 3901689 ~ 3915719 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232061.3
TGTGCCCTCATTGTACTTTATATGATCTGTATCACACTGTCTCTGTACAATTTCactgcattttgcatttttcagcattttattccacattttgttcgatattttcttttttgcattatacTCTTTTTGAAGTACATAGTTAAACCGCACTTCCTGTGTTTTCTTCGCTTCGTGTTATGGTTTCTATTTAATATCTGACCAGGAACAATCTAGATCAGGGCTGGCTGTTGCTCATTAACATATCTATTATGTAGTATTGTGCAATAATTTCCATTAATCGTTGCAATAAAATAAtcgaataaaacaaaaaaataaatatctgaaCAAAAAAAGCGATACAGAAAAATGTCAACAGCGTTGGATTAAATACTACGACCCAATGGCGTCATACGCTTTCGTGACGTACCCCGTCCGTACATGCGCTCCtgttgaccaatcagagaacgGGACGCCGCCTGTTCGCTCCTACATTGGCGCTGACTAAAGAAGGGCGTGGCTTCGCGCGAAGAGCAGTACCAATCAGGGAGTGTATgcaaattctgtttaaaaatattcGCGGGAATTCTGAGTTTCGCGCGAGCTTCTTTCGCGGGTAAAACTGCATCCCCCCTCATTCATTGTCAGCTTCCTGGAGCCATTTTTCCAGCGAGCGGCGCAGCGCTTCGGCTCCGGTTTTAAATCCAAACCATCTGCGCTTGTGCCGGACTAATATACCCCCAAACGTGGCCATATCGATAGTTAAGAGTCTCATCTGCTGATTGGGGCCGATATTGATGATATAAGCGCGGCGTGTAGGTGCAAAAAGAGTGTTTAAACCGAGGAGGGACAAAAGGACGGCCCCCCTACTCGAGTCCACGACGATGAGAAGAGGGATCTCCTCAGCCCCGGAGAAAGTCATAATCGCAGGGGTTGGAGGCTCCTCGCTGGACAAAACCGCGGTGTTGACGGCCCTGTCCGACCGCCTGACCTCTCATCTCCCCGCCACAGCTTATATCCAAATAATAACCCCGCCGCCGGGCATTTCTCAGACCTCCGCCGTGTGTCTGTCTGAGGCTCCGACTGCCAGTTTGTACACAACCCCGCACGGGAACAACGGAGCCGGACTACGACCTGCCCTGGGACGCCCtccgGCGAAGAGACGCTTGGCTTTGGATGATGCAGACCACTTGTACACCGCTGAAGTTGCCAAAACTCCTAAGACGCAAAATGGAGCACCGCTAGCTGTGCTGAAGGGCAACAAAACACCAAAGTCTCCATCGGAGAAGACGCGATACGACACCTCTCTGGGTCTCCTGACGAAGAAGTTTGTGCAGCTCTTAGGCCAGTCGTCCGACGGGGTGGTGGACCTGAACCAAGCAGCTGAAGTCCTCAATGTCCAGAAGAGACGGCTCTATGACATCACCAATGTCTTGGAGGGGGTTCATCTAATCAAGAAGAAATCGAAAAACAACATACAATGgatGGGCTGTAACCTGTCAGAGGTTGGTGGGGTATTGACCCAGAAGCAGACCCTAAGCAGTGAGGTGGCTCAGCTGGTGCAGGAGGAACGCCGGCTGGACGAGCTGATCCAGAGATGCACCCTGGAGGTGAAGCAGATGACTGAGTCAtcaaatggacaaaaATTCGCTTACGTGACGTATCAAGACCTGCGGCGGGACCAGGACCTAAAGGATCAGACGGTCATAGTAGTCAGAGCGCCGTCTGGGACCAAGTTGGAGGTGCCTGATCCACAAGAGGGTCTACAGGTACATCTAACCAGTACAAAGGGTCCTATAGATGTCTTCCTGTGTCCGGATGAAAATACCCCCGACAGTCCAGTGAAGAATGAAGGCTTGCGCTTGAACGGAGAGTCATCACCTTTCATGAAGGTGTTAGAAGACGCAAACACAAGTTCTGGCCCTGCAGTAACGGTCACCAGCTTATCGCCCATCACATCTCCATTCACCAGCCTCCTACAGCAGACAGAAGACCAGATCTCCTATGGCGAGGCACCCTTCATCAGCCTGGGCTCACCCCCTCTCAGCGAGGACTACCTCATGAGCCTGGGTGAAGGAGAGGGCATCAGTGACCTCTTTGATGACCTGGATAGACTGCCGAACCTGGACGACCTTCTCTGCAACTGAGTGTTCATGAGTCTCTGAGACTCCATTTTGGGTTCAGATGTTCAATTTGGGACAAGGAGCTCAGCCTTCTGAGGTGACTCGGATCTGTCGTGCTTGCATTGGCCAATGCAATCATCTCACACATGGCCTCGGCTTGGTTTTACAGGTTTTCTTCTCAATCTGTATATCCTTACCTGTTcagcagtgtatgtgtgtatataggaCCTGTTTTCCAAATGGATACCAGAATGTCCTCAATGAAATCATCATTCTTTCAAGAGGCCTTACGATTCATCAGTGGTGACTAATGCATCGGAAATATGTTCTCTGGATCACTTGAGTGAACAAGTGAGTTGGAGAAAGTGAAGTTCTGTGTGGAACtacacaggtttttttttcttctctgcttTGTATAGAAATGATATACACTAGCAGAGTAAATCTGTGGTCAACCTCAAAACCACAAATTTTTAATCAGGGGACTCATCTGTGGAAATATCTTGTCTGCACTTGTTGCAGATTCATGCACTCCCTTTTGAATGAGATCAGTGGTCACCTTGAGCCTTTCTGATCATTTGAAAGCTGTTGGACTAATGACGTGTTATAGGGCTAAATGGCACTGCATTCATCTTCATGGAGGAACGACATGCTCGGACACTGGCAGGATTACCAACTGAagtgacttaaaaataagggatctGCTTGACCAGTGGCTGGTTCCATTTCAATGTTGGAAGTGCACTTTAGATCTTTTTTCCTGGATGTATGCTTACTGTGCCGCCatccaaaagaaaagaaaatcagttCTAGGCAATTTTACAGAGTGGACGTTTTTTTACTACTGTGTGAAGGGAAATTACTAGTATTTTCAATTTAGTGTgttcatatatattttccttttcGCCATTTAGGTTGTCATTGGATATTCTCAGCTTTGTTGTTAAGCTGTGatgttaaaagtataaaatgtcTTTTCTAAGTCAGGCTTGATCAACTTAAAATGCAAGGCAGGTGTCCTTGATGTGTGAAAAGTGTGGTACTGTGCTGTAGGCTTTATCTAATTCAGGATAATGCTTGGTCTTACTTATACCAAAACCCTGTTTGACTCAATCCCCTGAAATTTAAACATTCATTAGCTACTTGTTGACCATTATGTTTGTCAACATCATGCATCTACAGACCACAATGTACTGTTTCAGCATTGCCATACACAAGTTTCATCATAGGATGTGCACTGTCAATTAAGACTAAATAAACCATACAAATCCA
>XM_007232062.3
CAAACAAATACAAGTGTCTGCTTTAGAGACCCAGTTACACAATTGTACTAATAATACATATAGATTTCATCTTGAGCACAGTTTTCTTTTGGGTTTCTTTTGGTGTACAAACCCCTAggttaaaaattaattttagaatAAGCCTTGAGCACTGCTTTAGAAAGCAGCAGTCTGAGTGTTTGAGATTAATGTGGCAGTATAAGTTTCTTAAAAATGTAAGTGGTAAAATTATATGAAGatcttaaaatgaattaaagaaaGCAATTGGTATTTAAATATCCTTAGATAAATATGGCCTGGTACAGAATACACAATCCTCAAAATGGCTGCTGGTACTGTTTTTAGCAGTGCCACCTACTTGTCCATTTTCATATATTGCTGTCACACAGTGTCAAAACACACAACTAAGtctatttaaagtaatttaatgtGGGTTCAGCCATGTGTGATTGAGGCTTACTGTTTGCACAGTGTTAGTTATTTACTGAAGTGTTAGATTACAGTGTTTGTTAACCTCATTAGCTTTGCAACTCCAGTATGAAAAGAAAGTATCAAACATGTATTTAGTCACCTTCTTAATTTTCCAAATATTCCAGGGTGCACATATTTGActtggatataaaaaaaattgaccatGACTTGTGGTGGGAAACACTCATTTTATTGTCTGCTCTGCTCACTgggaattaataattaattgatcagttgattcatgttttttttgctggGAAAGAAGCAGGGGTTGTATCTTTTGGCAGCAGCCACTAACTATCAGTATGTTTGCAGAAGTCATGTGTCCGTAATGTACTTTAACACCAGGCCTCTGCCACCCACCCCTCCCTCTTGATTACATGCTCAGATATGCGGTTCAGCTCATGAAGACCTTCATAATTCTTTATGCGAAGAGACGCTTGGCTTTGGATGATGCAGACCACTTGTACACCGCTGAAGTTGCCAAAACTCCTAAGACGCAAAATGGAGCACCGCTAGCTGTGCTGAAGGGCAACAAAACACCAAAGTCTCCATCGGAGAAGACGCGATACGACACCTCTCTGGGTCTCCTGACGAAGAAGTTTGTGCAGCTCTTAGGCCAGTCGTCCGACGGGGTGGTGGACCTGAACCAAGCAGCTGAAGTCCTCAATGTCCAGAAGAGACGGCTCTATGACATCACCAATGTCTTGGAGGGGGTTCATCTAATCAAGAAGAAATCGAAAAACAACATACAATGgatGGGCTGTAACCTGTCAGAGGTTGGTGGGGTATTGACCCAGAAGCAGACCCTAAGCAGTGAGGTGGCTCAGCTGGTGCAGGAGGAACGCCGGCTGGACGAGCTGATCCAGAGATGCACCCTGGAGGTGAAGCAGATGACTGAGTCAtcaaatggacaaaaATTCGCTTACGTGACGTATCAAGACCTGCGGCGGGACCAGGACCTAAAGGATCAGACGGTCATAGTAGTCAGAGCGCCGTCTGGGACCAAGTTGGAGGTGCCTGATCCACAAGAGGGTCTACAGGTACATCTAACCAGTACAAAGGGTCCTATAGATGTCTTCCTGTGTCCGGATGAAAATACCCCCGACAGTCCAGTGAAGAATGAAGGCTTGCGCTTGAACGGAGAGTCATCACCTTTCATGAAGGTGTTAGAAGACGCAAACACAAGTTCTGGCCCTGCAGTAACGGTCACCAGCTTATCGCCCATCACATCTCCATTCACCAGCCTCCTACAGCAGACAGAAGACCAGATCTCCTATGGCGAGGCACCCTTCATCAGCCTGGGCTCACCCCCTCTCAGCGAGGACTACCTCATGAGCCTGGGTGAAGGAGAGGGCATCAGTGACCTCTTTGATGACCTGGATAGACTGCCGAACCTGGACGACCTTCTCTGCAACTGAGTGTTCATGAGTCTCTGAGACTCCATTTTGGGTTCAGATGTTCAATTTGGGACAAGGAGCTCAGCCTTCTGAGGTGACTCGGATCTGTCGTGCTTGCATTGGCCAATGCAATCATCTCACACATGGCCTCGGCTTGGTTTTACAGGTTTTCTTCTCAATCTGTATATCCTTACCTGTTcagcagtgtatgtgtgtatataggaCCTGTTTTCCAAATGGATACCAGAATGTCCTCAATGAAATCATCATTCTTTCAAGAGGCCTTACGATTCATCAGTGGTGACTAATGCATCGGAAATATGTTCTCTGGATCACTTGAGTGAACAAGTGAGTTGGAGAAAGTGAAGTTCTGTGTGGAACtacacaggtttttttttcttctctgcttTGTATAGAAATGATATACACTAGCAGAGTAAATCTGTGGTCAACCTCAAAACCACAAATTTTTAATCAGGGGACTCATCTGTGGAAATATCTTGTCTGCACTTGTTGCAGATTCATGCACTCCCTTTTGAATGAGATCAGTGGTCACCTTGAGCCTTTCTGATCATTTGAAAGCTGTTGGACTAATGACGTGTTATAGGGCTAAATGGCACTGCATTCATCTTCATGGAGGAACGACATGCTCGGACACTGGCAGGATTACCAACTGAagtgacttaaaaataagggatctGCTTGACCAGTGGCTGGTTCCATTTCAATGTTGGAAGTGCACTTTAGATCTTTTTTCCTGGATGTATGCTTACTGTGCCGCCatccaaaagaaaagaaaatcagttCTAGGCAATTTTACAGAGTGGACGTTTTTTTACTACTGTGTGAAGGGAAATTACTAGTATTTTCAATTTAGTGTgttcatatatattttccttttcGCCATTTAGGTTGTCATTGGATATTCTCAGCTTTGTTGTTAAGCTGTGatgttaaaagtataaaatgtcTTTTCTAAGTCAGGCTTGATCAACTTAAAATGCAAGGCAGGTGTCCTTGATGTGTGAAAAGTGTGGTACTGTGCTGTAGGCTTTATCTAATTCAGGATAATGCTTGGTCTTACTTATACCAAAACCCTGTTTGACTCAATCCCCTGAAATTTAAACATTCATTAGCTACTTGTTGACCATTATGTTTGTCAACATCATGCATCTACAGACCACAATGTACTGTTTCAGCATTGCCATACACAAGTTTCATCATAGGATGTGCACTGTCAATTAAGACTAAATAAACCATACAAATCCA

Function

symbol description
e2f3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in liver. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human E2F3 (E2F transcription factor 3).

NR:

description
PREDICTED: transcription factor E2F3-like

GO: NA

KEGG:

id description
K06620 E2F3; transcription factor E2F3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232061.3 True 3371 mRNA 0.46 7 3901689 3915719
XM_007232062.3 False 3140 mRNA 0.42 7 3904917 3915719

Neighbor

gene id symbol gene type direction distance location
LOC103037205 tmem65,LOC108429253,LOC108271490,LOC106922370,LOC103135153,LOC106953768 coding upstream 41817 3759945 ~ 3859872 (+)
LOC103035455 LOC103035455,LOC108429251 coding upstream 160425 3653800 ~ 3741264 (+)
grb10 grb10,LOC103031323,LOC107551212,LOC107751877,LOC107746967 coding upstream 529003 3284027 ~ 3372686 (+)
cobl NA coding upstream 629086 3147369 ~ 3272603 (+)
LOC103037869 triob,LOC108429234,LOC107746974 coding upstream 895315 2736129 ~ 3006374 (+)
LOC103038805 NA coding downstream 7942 3923661 ~ 3925572 (+)
tmem158 tmem158 coding downstream 246155 4161874 ~ 4164337 (+)
LOC103035111 NA coding downstream 254727 4170446 ~ 4194866 (+)
decr1 decr1,LOC107580031,LOC107756153,LOC107704989,LOC107705494 coding downstream 286244 4201963 ~ 4225743 (+)
LOC103036464 kiaa0319 coding downstream 481372 4397091 ~ 4421912 (+)
LOC111193419 NA non-coding upstream 146919 3753172 ~ 3754770 (+)
LOC111193420 NA non-coding upstream 148992 3751492 ~ 3752697 (+)
G96915 NA non-coding upstream 173116 3727932 ~ 3728573 (+)
G96912 NA non-coding upstream 185288 3713518 ~ 3716401 (+)
G96888 NA non-coding upstream 318924 3533546 ~ 3582765 (+)
G97000 NA non-coding downstream 17092 3932811 ~ 4195776 (+)
G97029 NA non-coding downstream 180415 4096134 ~ 4165899 (+)
G97035 LOC103034794,LOC108437355,LOC104937918 non-coding downstream 280229 4195948 ~ 4197937 (+)
G97038 NA non-coding downstream 310221 4225940 ~ 4287454 (+)
G97042 NA non-coding downstream 326811 4242530 ~ 4256999 (+)
LOC111193421 mboat1 other upstream 2770 3864990 ~ 3898919 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other upstream 462963 3389051 ~ 3438726 (+)
LOC103040575 ube2i,LOC107677193 other upstream 3093115 799224 ~ 808574 (+)
ndufaf6 ndufaf6 other downstream 1049751 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 1891849 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 2364603 6280322 ~ 6382717 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other downstream 2616797 6532516 ~ 6565003 (+)
adar adar,LOC107723500 other downstream 2738631 6654350 ~ 6681691 (+)

Expression


Co-expression Network