LOC103035039


Basic Information

Item Value
gene id LOC103035039
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 715242 ~ 731435 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232943.3
GTGTGTTGGTGCACACATTATACTGCAGCAGGAAGGGAAGACAGCAAAGGCCAGACATGTTTATCCTGGTGTGTCGCTACAACCGGGTGTTTGCCTACCCCGGTGATGATGTCACGCTGACCTCTCACCTCTCCCCTGAAACCAGTGCGGTTGATATGGAGATCAGGTGGTTCAGGGGGATAGAATGTATTTACCTGTATAAGAACGGGCAGGTGACGGTGGGTAAAAGGTATGAGGGCAGGCTGAGTTTGTCCACTGAGGAGCTGAAGATAGGAAACGTTTCTCTTCTTCTGAGAGATGTCGGCCAGGCGGACACTGGAATCTACAGCTGTCAGGTCATCAGTGGCGGAAACTGGGAAAACAGGGCGGAGAAGACCATTCACCTGTACATGGCAGGTACGGAAATACTTTCACCTGAGAGATCGGGGTTGAAAATTGCAGAGCAGGACAGCCTGGATATGGAGGAGTCGGTTCATTCACTTGAAATTAAGAAACGACTGCAGAAAAAGGACAAAGAGCTTCAAGATAAGATTAAGGAGTTGGAAAGCATGGCAGTGGAGCTGAGGAGAGTTACTGGTCTCCTACAGGACAGAGAAACTGGTCTGGATGGCATGAGAAAAGTGGTGAATGACAGAGAGGTCCGTTTGAACAGCATGGCCAGTGAACTGGAGGCCTTTAAACGAGAACTGGAGAAACTGGCACTGAAACTACAGGAGAAGGAAGAAGAGAGCAAGGTCCTCTCAGAAGAGCTGCAAGCAAGAACAAGAGCAGTCCAGGAGCTTACAGTGAATCTGCAGGAAAAGGAGCAGgaactggaggaggagaagaaacaTCAGGAGGAAAGAGAGCAGGAACTGGAGGAAGAGAAGCAACACCTGGAGGAAAGAGAACAACTGCCGCAGACAGtaaATGGAGGCAGTCCCAGCATGGCAGATGTACCCCAAAGTCCTCCCACTTCAGAACTTGTGGAAGCAAGTGAGAAGATGCTGAGTAAAATGTACCAGGACCCAACAGAGCAGCtggaagagatagagagatggattCAGCaacaaagagaagaaagaaaggcaAGAGAAGAGCAGGAGAGGACGGACGCTCTTGAGAAAGAGTTTCTCAGGTACGCTCTGATGATGAAAGAACGGATCGAGGAGGAGCACGAAAAGATTATGACCGTTGTGAAGATGGCGGCTGACCTTAAGATGGAGCTAGAATATGCAGAGACTGAGGAGGAAAGAGGTGAGCTGGAGCTGCAGCTGAAGGAAGCTTCAGAAAGACAAAGGCAAGGGGAGGAAGAGATGGACAGACTGGCAAAAGAGATCGACAGGCAGAGAAACATAATCGAGGAGAAGCACAAGAATGAGTTAGAGGAGATCAGAGAGAAGTACGAGGTTGTGTCGAGGATTGAAGCAGAGACAAACCTACTGAAAATCATCTTGCCCGACGTACAGATGTACTTTCGGAATGTAACGGCACCATTGAGGAACACCTGGAAGAAGCAGATGCAGGAATTGGAGAGTGAGAATATAGAGTTGAAGCAGACTGAAGAAAGATATCCATATCCAGACAGTGTAGAAGACTATGACAGAGAATATCAAAGGAGTCCAATTGAGGAAGAAGAGTCCCCAAGAGAAATTCTCGAAGTTTCTGAGTTAAGAATGCATGCAGATCAGTTGAGTCACCTCAGTGAAGAGGGTCCAGAATTAAGTGACAGTTACGAAGAGAACCAACCAAGACTGGAAGGAGAAATGAATGAAAAGGTACAGCAAACTAACGAAACAGATTCTGAAAGTGAGACTTCGGAACTGCATCCAAAACTCAACATGGTGAACGGTATGATGATCAATGGAGGGCATGAAGAAATACAAACAGACATTGGCCATGGAGCTCAAAAAGAGCAAGAAGGAGTAGGCGAGCATGATGAGAAGGAGTGTGAAGAGGACTTGGATTATGCCCAGTAGTCATGCTGGCTCTAATCCATGTTTAAATTTTGGAAGACACAGCATGTAATTAAACTGCTCAAGCTGTGTCAGAATTGGCAgtagatttagctttttttgaGTAGTTGCCAAAGCCTCATTTGATGAGATTGAAGGGATGCTTTGACGATGTTCCCATTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232943.3 True 2120 mRNA 0.47 6 715242 731435

Neighbor

gene id symbol gene type direction distance location
LOC103035662 tnnt1,LOC108429193 coding upstream 16508 685850 ~ 698734 (+)
LOC103035972 LOC108269775,LOC100333227,LOC107747872,LOC100704930 coding upstream 32937 652624 ~ 682305 (+)
crhr1 crhr1,LOC108429163,LOC108273210,LOC107662410,LOC105890724,LOC108413653 coding upstream 78812 596986 ~ 636430 (+)
LOC103038500 c1ql1,LOC108429188,LOC107677187,LOC107667184,LOC107554477,LOC107599703,LOC107717612 coding upstream 219859 481159 ~ 495383 (+)
LOC103039326 LOC108429160 coding upstream 255060 449751 ~ 460182 (+)
tsr3 tsr3,LOC107717598,LOC107667183,LOC107747895,LOC107556684,LOC107677200 coding downstream 12950 744385 ~ 750365 (+)
LOC103033547 pdpk1b,LOC108429196,LOC108264442,LOC107747865,LOC107667172,LOC107677174 coding downstream 21650 753085 ~ 776488 (+)
LOC111193407 LOC108429197,LOC107677189,LOC107599708,LOC107747868,LOC107717626,LOC107554503,LOC107719174,LOC107703376 coding downstream 46394 777829 ~ 795543 (+)
cog7 cog7,LOC107717425,LOC107747870 coding downstream 109433 840868 ~ 864588 (+)
LOC111193408 NA coding downstream 212438 943873 ~ 948585 (+)
G96073 NA non-coding upstream 129130 585905 ~ 586112 (+)
G96061 NA non-coding upstream 136411 578494 ~ 578831 (+)
LOC111193406 NA non-coding upstream 182173 531857 ~ 533069 (+)
G96021 NA non-coding upstream 184277 530684 ~ 530965 (+)
G96020 NA non-coding upstream 187494 527430 ~ 527748 (+)
G96116 gnptg non-coding downstream 5306 736741 ~ 743739 (+)
G96124 NA non-coding downstream 77886 809321 ~ 809530 (+)
G96132 NA non-coding downstream 104047 835482 ~ 836102 (+)
G96281 NA non-coding downstream 610126 1341561 ~ 1391532 (+)
G96282 NA non-coding downstream 612602 1344037 ~ 1344448 (+)
LOC103040575 ube2i,LOC107677193 other downstream 67789 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 2657616 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 3133555 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 4234035 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 5076133 5807568 ~ 5850530 (+)

Expression


Co-expression Network