LOC103035662 (tnnt1,LOC108429193)


Basic Information

Item Value
gene id LOC103035662
gene name tnnt1,LOC108429193
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 685850 ~ 698734 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232945.2
gtgtttttcataggacaacGACGATATGTAGTCTGgtcatttaataaacaaaatatgtatACTGCTGTGATAATGTTAAAACATCATCTCTTTACCCATTCCCCACatatttcctttttcttttctttttttgtgggaccctttaacttaaatataacaTAAGAGTAGCAGGACTAGATCCTGCATAGTTGGCCTCTTTCCAACTAGTATATGGGGTATAAAGCTACATTCACCTGTCAATCACCACACACACGACTCTGCCCCACTGTGAGGGACTTTTTAATGTCTGTTGTGGCGTCTCAGTCGTTCATGATTGGCAGAAGCTCCACGTTTGCCCCGAGTGGATGGTGTTAGGATGTAATTATCATCCGTGCTCATCTGTCTGTCATCCATTACAAAGATTTCTCCCACAAAATCCCTGTAATCCACACAGTCCGCCCTGTCCATCACACACCCAGTCCTCCCTGTCCGTCACTGAAGAGTTCCTCTACAGTATAAACCAGAGACCAGCGCTCCATCAGTTTATTCTTCACTCACTTCTGAGGTTCATACACTGGTACATCCTGAAGACTGTGAAAGTGCCTGCCTTTTCCATCATGTCTGACATTGAGGAGGAGCATGAGGAACAGGCTGGAGGCTTTGAAGAAGAACGGCCAAAATACAAgccAATGCACTCTCAACTGGCTCCTAAAATCCCAGAAGGGGAACGAGTGGACTTTGATGACATCCACAGGAAGCGGATGGAGAAAGATCTACTAGAGCTGCAAACCCTGATTGAAGTTCACTTTGaccagaggaagagagaagaggaagaactGATCGCTCTGAAAGAGAGAATTGAGAATCGCAGGGCTGAGAGAGCCGAGCAGCAGAGGGTCCgagctgagaaagagagagacagacagaccaggATTGCGGAGGAGCGTCAGAGAAAGGAGGATGAAGAGGCGAAGAAGCGAGCTGAAGATGAggcaaagaagaagaaagttCTGTCTAATATGGGAGCACATTTTGGAGGCTTTCTAGCTAAGGTAGAGCAGAGGAGAGGAAAGAGACAAACAGGGAGGGAAATAAAAAGGAAGACTCTGGCAGAAAGACGCAAACCACTCGCTATTGACAACCTGAGAGAGGATGGACTGAGagagcGTGCTCGAGAGATGTCGGAGTGGATCTACGAGTTGGAGTCTGAGAAGTTTGACCTGATGGAGAAGATGAGGAGGCAGAAATATGAGATTAAAGTTCTTCTGAATCGCATCTCTCACGCTCAGAAATTtaagaaaGGCACGGGTGGCAAAGGAAAGGTTGGAGGTCGTTGGAAATGAATAaacaccaatatatatataagatttcaccactaaaatatacaatatttcacCAGTATTTAGTGGCTAATTGCACATAAGaagtaataaatattaatagtgGTTTGCtaactgtataataattattgcacactaaAACATGTCCATTTAACCAAA
>XM_022674062.1
ggctttcctgtggaaacaataaacgTCCGCCCTGTCCATCACACACCCAGTCCTCCCTGTCCGTCACTGAAGAGTTCCTCTACAGTATAAACCAGAGACCAGCGCTCCATCAGTTTATTCTTCACTCACTTCTGAGGTTCATACACTGGTACATCCTGAAGACTGTGAAAGTGCCTGCCTTTTCCATCATGTCTGACATTGAGGAGGAGCATGAGGAACAGGCTGGAGGCTTTGAAGAAGAACGGCCAAAATACAAgccAATGCACTCTCAACTGGCTCCTAAAATCCCAGAAGGGGAACGAGTGGACTTTGATGACATCCACAGGAAGCGGATGGAGAAAGATCTACTAGAGCTGCAAACCCTGATTGAAGTTCACTTTGaccagaggaagagagaagaggaagaactGATCGCTCTGAAAGAGAGAATTGAGAATCGCAGGGCTGAGAGAGCCGAGCAGCAGAGGGTCCgagctgagaaagagagagacagacagaccaggATTGCGGAGGAGCGTCAGAGAAAGGAGGATGAAGAGGCGAAGAAGCGAGCTGAAGATGAggcaaagaagaagaaagttCTGTCTAATATGGGAGCACATTTTGGAGGCTTTCTAGCTAAGGTAGAGCAGAGGAGAGGAAAGAGACAAACAGGGAGGGAAATAAAAAGGAAGACTCTGGCAGAAAGACGCAAACCACTCGCTATTGACAACCTGAGAGAGGATGGACTGAGagagcGTGCTCGAGAGATGTCGGAGTGGATCTACGAGTTGGAGTCTGAGAAGTTTGACCTGATGGAGAAGATGAGGAGGCAGAAATATGAGATTAAAGTTCTTCTGAATCGCATCTCTCACGCTCAGAAATTtaagaaaGGCACGGGTGGCAAAGGAAAGGTTGGAGGTCGTTGGAAATGAATAaacaccaatatatatataagatttcaccactaaaatatacaatatttcacCAGTATTTAGTGGCTAATTGCACATAAGaagtaataaatattaatagtgGTTTGCtaactgtataataattattgcacactaaAACATGTCCATTTAACCAAA

Function

symbol description
tnnt1 Predicted to enable tropomyosin binding activity and troponin T binding activity. Predicted to be involved in sarcomere organization and slow-twitch skeletal muscle fiber contraction. Predicted to act upstream of or within regulation of muscle contraction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of troponin complex. Is expressed in muscle and slow muscle cell. Human ortholog(s) of this gene implicated in nemaline myopathy 5. Orthologous to human TNNT1 (troponin T1, slow skeletal type).

NR:

description
PREDICTED: troponin T, slow skeletal muscle-like isoform X2

GO: NA

KEGG:

id description
K10372 TNNT1; troponin T, slow skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232945.2 True 1478 mRNA 0.44 12 686979 698734
XM_022674062.1 False 1070 mRNA 0.45 13 685850 698734

Neighbor

gene id symbol gene type direction distance location
LOC103035972 LOC108269775,LOC100333227,LOC107747872,LOC100704930 coding upstream 3545 652624 ~ 682305 (+)
crhr1 crhr1,LOC108429163,LOC108273210,LOC107662410,LOC105890724,LOC108413653 coding upstream 49420 596986 ~ 636430 (+)
LOC103038500 c1ql1,LOC108429188,LOC107677187,LOC107667184,LOC107554477,LOC107599703,LOC107717612 coding upstream 190467 481159 ~ 495383 (+)
LOC103039326 LOC108429160 coding upstream 225668 449751 ~ 460182 (+)
cep162 cep162 coding upstream 461055 163671 ~ 224795 (+)
LOC103035039 NA coding downstream 16508 715242 ~ 731435 (+)
tsr3 tsr3,LOC107717598,LOC107667183,LOC107747895,LOC107556684,LOC107677200 coding downstream 45651 744385 ~ 750365 (+)
LOC103033547 pdpk1b,LOC108429196,LOC108264442,LOC107747865,LOC107667172,LOC107677174 coding downstream 54351 753085 ~ 776488 (+)
LOC111193407 LOC108429197,LOC107677189,LOC107599708,LOC107747868,LOC107717626,LOC107554503,LOC107719174,LOC107703376 coding downstream 79095 777829 ~ 795543 (+)
cog7 cog7,LOC107717425,LOC107747870 coding downstream 142134 840868 ~ 864588 (+)
G96073 NA non-coding upstream 99738 585905 ~ 586112 (+)
G96061 NA non-coding upstream 107019 578494 ~ 578831 (+)
LOC111193406 NA non-coding upstream 152781 531857 ~ 533069 (+)
G96021 NA non-coding upstream 154885 530684 ~ 530965 (+)
G96020 NA non-coding upstream 158102 527430 ~ 527748 (+)
G96116 gnptg non-coding downstream 38007 736741 ~ 743739 (+)
G96124 NA non-coding downstream 110587 809321 ~ 809530 (+)
G96132 NA non-coding downstream 136748 835482 ~ 836102 (+)
G96281 NA non-coding downstream 642827 1341561 ~ 1391532 (+)
G96282 NA non-coding downstream 645303 1344037 ~ 1344448 (+)
LOC103040575 ube2i,LOC107677193 other downstream 100490 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 2690317 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 3166256 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 4266736 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 5108834 5807568 ~ 5850530 (+)

Expression


Co-expression Network