LOC103037419 (LOC108429189,LOC108272415)



Basic Information


Item Value
gene id LOC103037419
gene name LOC108429189,LOC108272415
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 551438 ~ 573290 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007232952.3
CGGAATACAGGTGGGGGATAAAAAAACGTAGCAGCATCCctaagaggaggaggaggaggaggatgtgGATGATGCATCTGATAGGCGAGACCCTCTCAGCGACCATCtgtaccaataaaaaaacatggaagaATAGACATGGCTGGTGAGGTGGAGAGGGAGATGTAGCTTTGAGGATGCCATCCCTGCACGTTTCCCACTTGCTGCTGTGCTTCCTCCTCTTTTCCTGCGTTGGATGGAGTGAGAGCAAATCCCTCGCGGAGAATGGAGCCCACGAGGTGCAGGTGAGGGTTCAGGTGTTTGATGGCGGTGACCTGTCACCGCTGTCCAAAGCTGCCATTGTGGTCCATGGCAATCAGAGCGTGCTGGCATCCAGCCAGGCAGAGAATGACGATGCAGTGGTCGTAAAATTCCTGTACCGCACAGGCACGTGGGTCATCATCACAGCATCTCAGAGAGATTATGTCACCAGCTCAGTGCCCTGGCATGCCAGCAGAGTGCCCTtGTATGCCTCTGTCAGTCTGTACCTGCTGGCACAACGGCCAGGAACACTCATCCTGTATGATGATGTCATCCAGGTGTTTCATGGCTCTCCGGGTGGGCGGAGCCAGCCATGGCTACATATTCCAAGGCGGAGCTTACAGTTGAACTCCTCCTTTTCTGAGTTGACTGCAGTCTTGACCACTGCCAGGGATTTTAGTGAGATCAATGCCTTTCCCTACCTCCTAGCCCTGGAGCCTAACAACACAGgTGGTGAAAGCAGCTGGACTGATCTAACAGCAGTAGCAGCGGTCAGTGCTCAGCTCTTTGACCGTGAGGGCAATGCGGTTCAGGTTACTGAGCACATTCATGTTTCTGTTCCTCTGCCCTCTGACACACGGTTCCGATCACCCACCAGCGTGCCTGTGTGGGTGTATGACACTAagacagGCCTGTGGGTGAGGAATGGGACAGGCTACATTAAGAGAGATGGAGCTCATCTCACATTGGACTTCATGGCCTCACGGCTTGGCTATTGGATTGCAGCCTTCCCCTCTTCATCAGGGCCAGGTTTGTCTCATCCAGGCCTGAGGGATATTACAGCCTACCATACTCTTTTCCTGCTGTCCATATTGGGATCTCTGGCTCTTCTTGTACTGGTATTGCTCTGCGTCCTCCTCTACTATTGCAGACGAAGATGTCTAAAGCCTCGGCGGCAGCAAAAGCAAGTCCAAGCCTCATCTGCTCTGAGTGGCGCTAAACGAGACCAAGGCACCTCAACGTCTCGTCTCAACCTCATCTGTGGTGGTCATGCTGAACCTGCTGCTTCCAATGGCGATCTGGATGCCAGTAAACCTGACGCTTCACCGTCTCGTGAATACAAAAGTGCAAGGGAAGAGTTCTCCAAACACGTACCGGCACACAAACTCCGGCATTCGTCCAAGAGCAAACAGTCAAAAGGTGCCCAGCGGGGAGGCGAAAGCTTTCCCATGAAGGTCCATCGTTCCACAGACACAGGCAACCATGACAGCACTCTTATTCATGATGAGTACGGGCGTAAGTACAGCTCAGATGACAAGGATCACGAGTACCGTCGCAGACATGTTGTCAATGACAATCGCGGATACACGGCGGACCCGCCTTCTCCAGCCATGCCAGACAAGCCCCCTGAGTACTCTCAGGTCTCCCAAGGCCCAGACCTCCTTGCTCGTCCAACATCACTCAACACACAACCCGGACAGATCATATTCTGCAGCTCTTTAGATCAAATGACAGAGAACATGTATCGCAGCATGGTCCCAACCTTGGTTATCCCAGCGCACTACATGCGCCTGTCGTCTGAGTTCAATGCCGCTGAAGGTGGGAAGGATGGCCAGAGCCAAGCTGATAGGGAGAACCAGGGAGGTGCGGGTAACGGTGTCAGCGGTGGACTCCAGAACCAAGGCTCAGGTCAGATGCAAGCCCAGCCAGGGGTGGGGTCGCCAGCTAGCTCTGAAGAGAACATGTGGGCGTCTGGAGGTCCGTCAGCCCCCGTCCACATCCCGGTGCTCTTTAATGACTCCACTATGGCTCAGATGAATGGAGAACTTCATGCACTTACCGAGAAGAAGCTTCGAGAACTTGGCGTGAAACAGCACCCTCGTGCCTGGTTCATATCACTGGATGGACGTGCCAACGCTCACGTGCGGCACTCCTACATTGACGTTGGCACCGAGCTTGGCCACAGTGGAGCAAACAGCAGCAACCACAGTGCTCAAAGCACCCTCAGCGCCCCTGCTGGCAGCAGCAAGGATTGCAGTCCAGATACAGGCCTTCAGGATATCCCACATGAGCGCAAATCAGCCTCTGCGCGGAAGAGTAAAGAGGACCGGCACGGGAGTGGACGCAAAGGGCATGGAGGGAACAGTGTCAGCGGCGGGAAGCAGTATTCAAAACTGCCTTACAATGACCCCCTGGATCTCAGCGGTGGGGTCGGCCGCATGGGGGCAGGGTCACCCCTGGAAAATCCACTCACTCCCCTCCTGGATGATGGTCCCGAAGAGCCACGAGGGTCGTCGATGCCTAGACGGGGTCGCAGCCGAGGAAACAGCTCACGTAGCAGCAACAGCGAGACACAGCGTGACTCTGTCACCAGCCCAGAGGACGACAATGACCCAGACGACAAAGATGAGAACAAGAAAAGCCCATGGCAGCGTATTGAGGAACGGCCACTCATGGTGTTCCATCCCAAGAAGTAAAATAACCTGTAGGTGAAGATGAGACTTAAACACATTTCTCAAAGCTGAAATCAGCTTGGGCTTTGAGTTTAGATATCACGCTGCTGGATAATGTTTAGCTGAAGTCCACAATAACAAGCAACAAGTTACAGCCTTTTTACAGTGGGTACAAGGAAAACATATGCAGAGAATAAGCACAAGATGTCTTACCGGTCCAGAAGAGGGGAATAGGAATCATCTGTTTACAATCAATTTTGGGGCATTTTCatcacaaaaatcacaaaattacATCTTAAACTGTCTTAGTTCCTTCCCAGTTCAATGATTTGTGATGATATGTTTTTGAATAGTACCATGTCCACCGAAAAGGCTGATCAGttttttgaaagactttttttgACTCGGATTCGAATCTGAAGGTGGCTTTGAGAGGTTTGAGAGACACGTTTATGAACTGTTACCTGAAAAGAAGGCCAGATTTTGCTATGACGAGGAGTTCCTTCAAAGGCATGGAAGTTGTGGATGGTCAGCAGTCAGATCCAGGCCACACTCTGACGTTCTTAATGCAGTATAtctgtaccaaaaaaaaaaaacacaaacattttttatttcagacaacCACTTTTCAACCATTTTTATATACATGTACGCAGCATCCCAATGCTAATAGATTACAGCATACAGTGTGCATCACTTTATTTATGCCTTTTgcattttgtttctgtttttcttgcCTGAACTGTGGTTCTTTGGCGGCaatagtttgttgtttttttcttcaacaGCAAGATGTTACAACATAAACAGTGAATATCAAATATAGTATAGAAATATTATTCTAAACATTCCATTTCAAACATTCCGAATTACAGCACTTAAGATAACAGACTAGGATTTATATGGGTTTGTAGATTGTTTATTTGATAATTGTATTGAACATctatattttgtgttatttttttaatggttgtGATTTAGTCATTCGGTCGTGGTTGAAGTCATCCCTCCTTTCTGACCTATGTCATGTTTTGCATTTCTTACATAAAGATGATTTCTTACTGAGCTGAA

Function


NR:

description
PREDICTED: protein FAM171A2-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007232952.3 True 3764 mRNA 0.49 8 551438 573290
Loading

Neighbor


gene id symbol gene type direction distance location
dcakd dcakd,LOC107667188,LOC107747896,LOC107717668,LOC107554516 coding downstream 6419 536446 ~ 545019 (-)
LOC103040905 NA coding downstream 175008 366617 ~ 376430 (-)
LOC103042121 LOC108432773 coding downstream 219291 301691 ~ 332147 (-)
mrap2 mrap2 coding downstream 308992 234312 ~ 242446 (-)
LOC111193396 NA coding upstream 2221 575511 ~ 576556 (-)
dnaaf3 NA coding upstream 125433 698723 ~ 711111 (-)
gnptg gnptg coding upstream 163446 736736 ~ 743730 (-)
il4r NA coding upstream 238818 812108 ~ 827863 (-)
LOC103030489 kcnc3b,LOC103030489,LOC108429201,LOC107667167,LOC103358372 coding upstream 305604 878894 ~ 969646 (-)
G96058 NA non-coding downstream 23677 527434 ~ 527761 (-)
G96057 NA non-coding downstream 24677 526407 ~ 526761 (-)
G96056 NA non-coding downstream 25155 525949 ~ 526283 (-)
G96051 NA non-coding downstream 60443 490376 ~ 490995 (-)
LOC111193405 NA non-coding downstream 119045 431659 ~ 432393 (-)
G96081 NA non-coding upstream 5202 578492 ~ 579159 (-)
G96171 NA non-coding upstream 64092 637382 ~ 723478 (-)
G96204 pdpk1b,pdpk1,LOC108429196,LOC108264442,LOC107747865,LOC107667172 non-coding upstream 179718 753008 ~ 760508 (-)
G96205 ube2i,LOC107677193 non-coding upstream 182594 755884 ~ 808525 (-)
G96202 pdpk1b,LOC108429196,LOC108264442,LOC107677174,LOC107718133,LOC107554309 non-coding upstream 196796 770086 ~ 776473 (-)
LOC103043490 NA other downstream 285844 252340 ~ 265594 (-)
carmil1 carmil1 other upstream 1008717 1582007 ~ 1778100 (-)
LOC103031019 NA other upstream 1238411 1811701 ~ 1815034 (-)
mboat1 mboat1 other upstream 3305406 3878696 ~ 3899248 (-)
LOC107197182 NA other upstream 3576713 4150003 ~ 4178426 (-)
dek dek other upstream 3870939 4444229 ~ 4453002 (-)

Expression


LOC103037419(LOC108429189,LOC108272415) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC103037419(LOC108429189,LOC108272415) Expression in each Bioproject

Bar chart with 7 bars.
LOC103037419(LOC108429189,LOC108272415) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
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Co-expression Network