LOC103039326 (LOC108429160)


Basic Information

Item Value
gene id LOC103039326
gene name LOC108429160
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 449751 ~ 460182 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232958.3
GAAACACTGTATAAACCGCCGGCTCTTAACTTCCTTTAACACGAGTCACGAGTCTGAAGGATGAGGTTCTGCAGAGGGTATGGAGAGAATTAATGTGAGCTGGACTGCTGTGATAGTACTCAGACATCTTACACATCAGAATAATCAATAAACATGGacaaataactttttattttgtagtaCTCCAgtttaatacacattaaaaacGGATTTGGATTCTACTGTTTGGTAGGGGCCACTCTTACTTCTACTTGAGGCATAATCACTAAATTTTAAgtgtcaagttttttttttatcactttccCCTCTTTTCTGGATATCATATATTGGATATAACGTTAAGACAGTTATGTTGGAGGCCATTTTCCGAACCCCTCCTCTCACAGCTTTAGGAGTTCTGCTGCTCCTAAGCTCGCTGCTGAACCTCTGTTCTGGAGATGTTGGGGATTTCTCGCCATGCTTGAACTACTTTCACCGGGCTTGGCCACTAAAAGGCCTACAGGGCACTCCAATCTGCCAGCGCTTCGATAACCGGTATCATTTCGCCACGCTGTACAGCCGAGACCGCCGCACGCCACTGTTCTCAGCCTACATCTACAACCCACCTCAGGGCAAGAGACCTAAAGGAAACTGGAAGTATGAACCTCAGCTGGCCAATTCCAAAGCCGATGGTAACATGGTACCATTCCCCATACCGCCGGCGAAAGTGGACCAGAACGtggtggagagccaggctgttCAGGAAGACTACATCAACTCCAGCTACACCCGCGGCCACCTGAACCCCAGCCAGCACCACACTGACCCCACTGACCGCTACGCCACCTTCACCCTCACCAACGTGGTCCCGCAAAAGGCCGGCTCCAACGACGGACCCTGGGCCAAATTGGAAAGTAGCGTCAGCCAGAGACTCCAGGCGTACTGTCTGGGGGAGGCACATGTGGTGACTGGGATCATCCCGTATGAGAAAGACCGATGGCTGAAGGATAAGGGCAGAGTCGCTATCCCAGAGTACCTGTGGTCGGCATACTGCTGCCAGAACTTCAGCCAGAACCTTCCGAAAAGCCTGATCGACACGTTTCCCTCATACGCAGCCATCGGACGGAATGATCCGAATAGCACTGAGGAGATTGTGCCGGTGAATCCAAAACGGAAAAAGGCTTTCCTGGGCTACGATGTCCGGCCTATGCCTCTCCCCACTCTGGAGACCTACCTGAAGCAGCGCTACGGAACACCCATCAGTGTCTTCTATGAACAGTGCTCAGGGTCGTGACCTTTGGACCGTATAAAGAATGTCTAAGGCAGGGCTGTTTGGAAGGCTGGTGAAATTGCAGGGTTTAATTGTAACTAAGAAGGATGAATAATGTGAATAATGTGAGTAATaatgtgaataataataatgaatcaaaaaaatattggaGCCTCATTGGGAGTAAAGTAACAAGGCCAAGCCATATGCTGGGTCTCATTTACACGCCTagttttaaatactgttttttttttttccggacTATACGGTGCACCTAAAATTCTTTAACTttaccaaaaattgtcagtgtgccttacaatccagtgtgccttatgtttgAATTCTACtccgctgctaactggggctggctagcactgctaactgcagctggctatgctgctaactgtggctagctcTCACCCTAGGACAAAATACTGGagttctaagcttactgtgaataaacggaagtgctttactcacctaaatgaatggttttcaggagagaattctgtctagattaacattcagcgctcatttgactttaaaagaaaatgttttttttttttttcaagaattacagttttgattaCCTAGGCATTTCCCCCAGCTTCACCATTAGAAGAGAAagatggcgacacccttgctcacttcaatataggcatccttactagcatcacttaatgcgccttataatctggtgcaccttgtgtatgaaaatagatcagaaaatagacattcattgatactGCGTTttttaatctggtgcactttataatccggtgcgttTTATATTGTGTAAAATGCAGTAGCACATTTTAAGTGGAATCCTACATGTGTGATTTTCTACTTGGGAAGTTGGGAGAATATTTCAACCCCCAGTTtggaatccaagatggctgccctgctcatcaacagtagtaaaagcagtgttattttacagtttattagcactttTTGTGTCTCATTATGCCAGtcgtacacacagtactgtaccactttttttactgtgaaCATGTTTCCATGCTGTTTGGATGTGCAAAATACTGCAAAATGCATTATTACCAACTCATATgactattaatgattttttaactGATACTGACTTGGGAGCTAAATGAAATGCAGAAGTAGTGCTGATTGgcaaatttattttaacaaggagaaagacaaaaagatcACCTATGACCATTCTATGGTTCTCTCTTAAATtgacaccaggagggtgaataaTGCTCCACAACTAAACTGAACAAAGACAAATAATCACCCTTTCCTCTATTCTTACCTTTCATTTAGTTTCATTAATCcaattaaactgtaaaaaaaaaatattcaaatatgtaagcgattactttttttttaaaaaagaaagatttataacttttttgtaaatgtgCCAAAATAGTAACAAACTGTGcaaaaatacttaattaaattaattaaaatatgaaaaaattgaaaatcactgccacaaataaatagagttataaaataactcaattttggGAGGAGGTATGTGCCTGAAGCACCTCCCTCTTCTAATCAAACATCCTATAAATACCCTGCTCTTCACTTACATATCATGATAAGTTTTGGCAACCCTCCACCACCCCATCTTCTCCCATTAATTCTGCTCCCTCTCCCTCCTGACTCTACTTATAGAAGAGTCTTCCTATGAGAAGCTAAAGCTTATCAAACTGCTCACTGCTGTCTATTTTCTCTCTTATCATCTCTGCACAAAAGAAACATATGCTGAAGGCATGTTTTTAAACTAGCAAATTaacatcatgattttttttgttttggaaatcacagtaaaacagtaattctATTAACACCAAAGCACTACTTAAATCAATTATAATTTGAAAGTGAGGTAGTATTTTAGAAAACTCAGTAATATCTCAAAATAGAGTAAAATCTGATCTAGATGCATATTGAGACTATTGAGATATGTCTAAGTGACACATTGccatgtgtattttttttttaatactactaCATAGTACCTCCTAAAGTTTTACTAGGTGCAGTAGAAGGCATTGCAAAacgtaaagaaaataaagatcaGTTCATTCTCTGGCCAGCAGATGGAGACGTGAGCTCTTAATTACTGCTTAAATCTCCTTCttttaatgaaaacattttCATGAGTCAAATGGGGAGTCAGAGTCTTTCTTAGGCCTGTCAGGATACATTTGTTTCTTTGGAGAGTATATTGTCACAGAAATGATAAACAAGAGAATTTTATTCCACTGATACAACCATAAAGTAAcagcaaataatgcaaataagccAATTTCTGAGGGCAGTAGCTTTTCTTTAAGAATATTTACATATTGGAACTGTAATATGAAGttttaatatcctaaataaaaaaataagataaaacagTCAACATATCAGCTCACATTGATTGGTCTTTctaaactgttatttttttatattgatcaAAATAATCAGATGCGCTTCTGTCTTGGTTGAAGTGAAAATCTGCTACAACTCCGCCTCTCTAAAGCTACATTGGCTTACATTACAGTGTTGAAGTGGCATTTTATTGCTTTGTCCAAATTTGACACATTCTGTGCACATGTGTATGAGAAAATCTGAGCCTTTAAAATCAGTTTTGAGTGATTTTTTAGATGTTGGCTGTGATATGACCTCAAccaaacagtgattttttttttttgcttttacactttacacattTTACTACATAGAACTAAGCAATATAgtatgcagtattttttttatagagtatTATTTTATAGAGTATTACTAAGGGTGATCATTTaccacaaataaattaaatttatccCAGAAATCAAGCTAACATTCCTTTTAGtcaactttaatttttttaagtttaaagaaCTGAAAtcatgtgatgatgatgatgatgatgatgagtttcaataattcattattttaagataaagtattgtaaaataattttagacaaacaatagaaaaaatatCAATCTTTGAGATCAATCTTAAAGTCCCATGTTTAGAATCAGATCACCATTTACTCTGTGATTCCACCACTAGACAGCAGTGTAGGTTAACAATACTGTAAAGAATAAACACAAAGTACGCAGTCTGCTGTGAAGGAATATCAGGTACAATACTAAatggttttttttgtgtgtttttttatttgtgattcACTGGTGACTTcatttattaatgcattttttcatttattttttgacatCTTACTGTTTGGGATGACTGTATGAACTTTGAACTGTGCAATAATGTTCTTTTATACCTCAAAATAAACCTCTCTATATCtccaaataaca

Function

NR:

description
PREDICTED: endonuclease domain-containing 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232958.3 True 4557 mRNA 0.38 3 449751 460182

Neighbor

gene id symbol gene type direction distance location
cep162 cep162 coding upstream 224956 163671 ~ 224795 (+)
LOC103038500 c1ql1,LOC108429188,LOC107677187,LOC107667184,LOC107554477,LOC107599703,LOC107717612 coding downstream 20977 481159 ~ 495383 (+)
crhr1 crhr1,LOC108429163,LOC108273210,LOC107662410,LOC105890724,LOC108413653 coding downstream 136804 596986 ~ 636430 (+)
LOC103035972 LOC108269775,LOC100333227,LOC107747872,LOC100704930 coding downstream 192442 652624 ~ 682305 (+)
LOC103035662 tnnt1,LOC108429193 coding downstream 225668 685850 ~ 698734 (+)
LOC103035039 NA coding downstream 255060 715242 ~ 731435 (+)
LOC103044902 NA non-coding upstream 29575 409642 ~ 420176 (+)
G95961 NA non-coding upstream 96220 270113 ~ 353531 (+)
G95949 NA non-coding upstream 146541 298967 ~ 303210 (+)
G95962 NA non-coding upstream 174250 274506 ~ 275501 (+)
G95953 NA non-coding upstream 193461 252893 ~ 256290 (+)
G96018 NA non-coding downstream 65786 525968 ~ 526284 (+)
G96019 NA non-coding downstream 66293 526475 ~ 526761 (+)
G96020 NA non-coding downstream 67248 527430 ~ 527748 (+)
G96021 NA non-coding downstream 70502 530684 ~ 530965 (+)
LOC111193406 NA non-coding downstream 71675 531857 ~ 533069 (+)
LOC103040575 ube2i,LOC107677193 other downstream 339042 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 2928869 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 3404808 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 4505288 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 5347386 5807568 ~ 5850530 (+)

Expression


Co-expression Network