ccdc107 (LOC107555866)


Basic Information

Item Value
gene id ccdc107
gene name LOC107555866
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 9024387 ~ 9034301 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239445.3
GCGCGTCCAGCCCCGCagcagaggaagaagaagaagcagcagctgcagcagaaggaggaggaggaagacagTAGTCTGTGCGCTCTCAGGTGAATCCGCGCGTTCCCTCACCTGGATTCTGGTCTCGCGCTTCTCCCCCCCGCGGCCCCATGGTGTCTCCGGCGCAGCAGCTCGTGCTCGCCTTCACCGCCGCGCTCTGCTGCTTCATCTTGGTGCCCCGGATGTTCGGCAGCGGCGCGCGAGAGGAGCGCGCGGCGGCACGCAAAGGTCCGCCACTGACCCCCGGGGGTCTGAAGGGCGCGCACCCGCAGCCACCTCAGGCCTTCAGCAGCGCGGAGAACATGCAGCAGATGAAGAAGCTAATGGAGCAGGAGTTGCGCAGCGACAAGTACAAATCCAACAGCAAAGGATACGTCTTTACCCTCATGCCCCTCTACGCCATCGGGGTGGGCATATTTGCTGCATACAAGTTCCTTAAGATAAAGTCGGCGGAGGATACCCGGGCCCAGAAAGAGAAAACCGCCAGAGGCATCAAGAAGTCAGAGGAAACTGAGAATCAGCTGAATGAACTGGAGCAGCGTTTGGCTCAGACAGAGAAAATGCTAAACTCTATACTGACCCAACTGGACCCACTGACCAACtgTGTGAAGTCGGTGGCAATGGAGCAGAAGAATGAGATCATGTCGCAGCTGCAGTGTATCAGAGACCTGATGAAGAAACGAGGCATGCAGTGTCCACCCACCAACACCacggATGCAGCGTGTGAACGAAACCTTGACAACCTCATCGAGTCGCTAACGGCAATGGAAACACTCGGGCAGcggaaaccacacacacacccacctcAAACACTGCACACCACAGAGGAGCAAGAGGAAGACAAAGAGATGGAAGAAGAAGAGCATGAGGGACAGGGCGAAGAGGAGGATGAGGGGCAATGCGAAGAGGAGGATGAGAGGAGGAGTGGAGTGGAGGACGGGTGTGAGAGCGACTCCAGCATGCCCTCATTAGAGGAGTTGGAGGTAGTGGGCGTGGTTCAGAAAGTACCAGATGAGCTGGGGGCGGGGCTACGCAGAAGAAACCGACCTGACTGAGGGTGAAGAAGCTGTTAAAGTGATAGTTTGTAGTCAATCTGCCGAGGCGGGTTTGATTTCTGTTAGCTTCTTTAATTTCACACTAAAGCTGCGAGTGCTAGTGGAGTATAAGCTTTATTGCtggttagctacattagcctcaaagctccagtgctaatttaAATGCGTTTTGGCTGATTGATTCTATGTTAATTCTGTTATTGAGACAAACTATCGCTTTAAATGTGACCTCACCGAACcttgtgtatttgtttatttatgtatttatttatttgatattacaCTAAAGATAGGTTTTTATTGAATTGTCTGAACTGAACCATGCCTCAGCAGTCTATGCGGTATGAAATGCTTCGGGCTGAGTACAGAGGCATGAACATGCTTGAGTAAGTGGGCGGAGTTAAGAGCGTGGGTGCATGTGCGGTCTTTGCTctgcatgtgtgttttttaacccTTTGCATAACTGCATGCCGGTAACTGAAGGAGTGAAGGACAATCAGGATGGTGGAGTTTGGTATGCGGGACGGTGGGCTACCTCATTAAAGTgaaagtgcatgtaaacaaaatattgtaaatggTATGATCAAAATCCTTatattctgagttttttttgctacaagcctgtataaatataaagatcTGCTCATGTCCAtcattatctgtttttttttttacatttactctcaaattaatttagttttatattttcagtGAGTATAAGTGGGAGcgattaactaaaaaaataaagattttattgtctttaaatttGGATGTTTTCTATGCTACAGGTGCAGAGTGTAGTTTTAACAGCTGATCTTGTTCAGAGCtcagaaataaattatttatcagAA

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 107 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239445.3 True 1945 mRNA 0.48 6 9024387 9034301

Neighbor

gene id symbol gene type direction distance location
krr1 krr1 coding upstream 97879 8916576 ~ 8926508 (+)
LOC111193444 NA coding upstream 128790 8862740 ~ 8895597 (+)
LOC103033147 phlda1 coding upstream 203198 8818913 ~ 8821189 (+)
nap1l1 nap1l1,LOC106576514,LOC106609764 coding upstream 209247 8799265 ~ 8815140 (+)
osbpl8 osbpl8,LOC107555879 coding upstream 228607 8758128 ~ 8795780 (+)
LOC103035505 LOC108411721,LOC107658752 coding downstream 13564 9047865 ~ 9080238 (+)
cpsf6 cpsf6,LOC107729149 coding downstream 145484 9179785 ~ 9195720 (+)
LOC103042523 far1,LOC107590516,LOC103366393 coding downstream 180551 9214852 ~ 9268400 (+)
LOC111193395 NA coding downstream 328767 9363068 ~ 9365903 (+)
LOC103028562 ephb6,LOC108432347,LOC107724759,LOC107672963,LOC107549482,LOC107744289,LOC108270687 coding downstream 370519 9404820 ~ 9458769 (+)
G98483 NA non-coding upstream 59218 8963313 ~ 8965169 (+)
G98462 NA non-coding upstream 114102 8910008 ~ 8910285 (+)
G98460 NA non-coding upstream 116703 8907264 ~ 8907684 (+)
G98457 NA non-coding upstream 130107 8894054 ~ 8894280 (+)
LOC111193443 NA non-coding upstream 131125 8862875 ~ 8893262 (+)
G98494 NA non-coding downstream 28868 9063169 ~ 9153581 (+)
G98496 NA non-coding downstream 49288 9083589 ~ 9086583 (+)
G98497 NA non-coding downstream 49468 9083769 ~ 9084299 (+)
G98498 NA non-coding downstream 52332 9086633 ~ 9096883 (+)
G98500 NA non-coding downstream 105033 9139334 ~ 9140580 (+)
G97931 NA other upstream 1893578 7127804 ~ 7130809 (+)
G97926 NA other upstream 1954258 7068688 ~ 7070129 (+)
apoc1 NA other upstream 1958358 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 2342696 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 2459384 6532516 ~ 6565003 (+)
G98636 NA other downstream 278105 9312406 ~ 9312803 (+)
G98840 NA other downstream 961903 9996204 ~ 10002046 (+)
G98845 NA other downstream 1026132 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 1138252 10172553 ~ 10178459 (+)
G98967 NA other downstream 1459490 10493791 ~ 10498518 (+)

Expression


Co-expression Network