smg9 (smg9,LOC107699520,LOC107595308)


Basic Information

Item Value
gene id smg9
gene name smg9,LOC107699520,LOC107595308
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 7891775 ~ 7900812 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250806.3
TCCACCCGGATCGGGGACACGTAGCTAGGCAACGTTAGCACGGAAGAGCAGAGtgtgctagttagctaactagctaaactaAGCAGTGTTATCTGTGCTTGGCgtactgtaaatgtttaatttttagttttttacattAGTTTAGAGTGTATATATCAGAATACCGAccagaaaacatttttatatatgtgaTATTTGTGTGTAGTGGTGATTGGAACTGATTATGGGgcgtagctagttagctacctaCCTAGCAAGCTAAGCTATGCTATGCCAACTGTATTCTAActgtattttagttatttagagTTAGCTTatcttagcattagcttttcgTTTATCCTCAGTACTGCACGGTTAAGTACAAGCGTTAGGTTGAAAATGTCGGAGTCTGGACACAGCCAGCCCGGGCTGTACGGACAGGGCCGGAGGAGGCGGCGGCGGAGAGACAGGGAACCCGGGCCGCCCGGCCAGAACCTCTCTGGGCCGAGCCGAGACCGGGATTTTGGTCCTCGGGAGCGGCGGGATGGAAGTGAAGAGCCCCCTGGTCCGCTCCTCCAGAAAACCCCTATCATTCTAGCCAAGCCTCCCGGAGAGAGGTCAAAGCAGAATGCTCCAGTTGGTGGTACCCCTTTGGAGAAGCCTATCATGCTTATGAAACCTAGAGAAGAAGGAGGGAAATCTTTTGCTGCCCCTGAAACTGCACCTCCAGCATCTGGGCCTGGAGTTGCAAAGCTGGAGAGGGAAGGCCAGCGCCCAACGCAGCCAGTCTACCAAATTCAGAACCGGGGCATGGGCTCTGCTGCTTCTACTGGGGCTGTTGACCCTGTGATTGGCCAGACCAAGCTTCTCCCACCTGAGAAGATGAAGCACAGTATCAAGCTGGTGGATGAACAGATGAACTGGTGTGACAGTGCTATGGAGTACCTGCGTGACCAGACAGACATGCTGGTTGTAGGAGTCATAGGACTGCAGGGGACAGGAAAGTCCACAATCATGTCTTTCCTCTCAGCTAACACACCTGAAGAGGACCAGAGATCATATGTGTTTAGAGCTCAAACCCAAGAGATCAAAGAGCGAGGAGGCAACCAGAGCTGTGGGATTGACTTCTACATCACGCAGGAGAGAGTCATTTTCCTGGACACGCAGCCGATTCTAAGCCCCTCCATCTTGGATCATCTCATTAATAATGACCGCAAGCTGCCCCCTGAATATAACCTTCCACACACATATGTAGAGATgcagTCCCTGCAGATAGCTGCCTTTCTCTTCACTGTGTGCCATGTTGTAATAGTGGTCCAAGACTGGTTTACAGACATCAACCTGTACAGGTTTCTTCAAACTGCTGAGATGCTAAAGCCCTCAACTCCATCTGCCAGTCATGACAGCACCGGATCCTCAGGGCCAGATGATGGATCTGAATACTATCCTCACCTCATCTTCTTGCAGAACAAAGCAAGAAGGGAGGAATTCTGTCCTCGAAACCTGAAGAACATGCACATGGTGGTGGACAAGCTGATGGCTCACTCTCATCTAAAATATAAAGGTACATTGTCCATGCTGGACTGTAATATCTTCCCTGGACTTGAACGGGACTATCTTGGAACTGAAGTTAATCTCTTTCTTTTGCCACTGCTGGAGAACGATGGTGATGAAGCCTTGACAAGAGCAGGATCAGGATCTACGCCGCTTTTCTCCCTGCTGCCTGGCTACAGGGGCCACCCCAGCTTCTCTTCACTTGTGTCCAAACTCCGCAGCCAAGTTCTTGCTATGTCTCGTAATCAGCTCTCACACACCATCCTCACAGAGAAAAACTGGTTTCACTATGCTGCCAGGATTTGGGATGGTGTGAAGAAATCTTCTGCCCTGTCTGAATATAGTCGCTTACTGTCATAATCCAGAAATGTCTGGGAATCACAGAAAACAGGGACGTCTCTCCTTCCTGTGCTCTAAGTCTTGACCAGAGAACACTCCATGCACCACGAGAGTGAGGCTTCGATGACCAACATGTTCAACTGTCCCTTTATGAGCAGAGGTCGAGCTCAAAGGGACAACTCTGGTTGGCTGCACTTGCTGCTGAGATGCTAAGCTGTTGTTTTGTGAACAGGAAAATACAGCCAATGCGCTTTTGCTGACAGTGTTGGGTCTTTTACTgactaaaagttttttttttaaagaatttttgaATGAGCTGAAGAATGATGCCTGAGGGAGCATCGTCAGAAATGTAAGGCATGAGCTTCAGCAGGATGAGGATGATCTCAAAGAATGATTTCAGATGCTGATCCGTGTAATGATCCTTCAGACAACTGTATGTTTCTTTCTTgtgaaagtatttatttgataataaaaacagcaattcCTCCATCA

Function

symbol description
smg9 Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Orthologous to human SMG9 (SMG9 nonsense mediated mRNA decay factor).

NR:

description
PREDICTED: protein SMG9

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG:

id description
K18735 SMG9; protein SMG9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250806.3 True 2370 mRNA 0.48 13 7891775 7900812

Neighbor

gene id symbol gene type direction distance location
LOC111193438 NA coding upstream 10184 7869033 ~ 7881591 (+)
LOC103045356 ywhabl,LOC107723438,LOC107570839,LOC108265441,LOC107595301,LOC108429958,LOC105896388 coding upstream 25180 7848099 ~ 7866595 (+)
LOC103045564 LOC107570829 coding upstream 131979 7736322 ~ 7759796 (+)
LOC111193393 NA coding upstream 603168 7286540 ~ 7288607 (+)
apoc2 NA coding upstream 802357 7084787 ~ 7089418 (+)
spaca6 NA coding downstream 160151 8060963 ~ 8074397 (+)
LOC103021308 LOC108429924,LOC108265369,LOC107699476,LOC107714672,LOC107595349 coding downstream 244152 8144964 ~ 8150644 (+)
LOC103023078 NA coding downstream 252647 8153459 ~ 8168108 (+)
LOC103022775 NA coding downstream 272743 8173555 ~ 8197686 (+)
LOC103021850 NA coding downstream 299725 8200537 ~ 8213872 (+)
G98115 NA non-coding upstream 56571 7781558 ~ 7835204 (+)
G98117 NA non-coding upstream 98448 7791023 ~ 7793327 (+)
G97988 NA non-coding upstream 129951 7761185 ~ 7761824 (+)
G97980 NA non-coding upstream 165625 7724230 ~ 7726150 (+)
G97982 NA non-coding upstream 169466 7721279 ~ 7722309 (+)
G98133 NA non-coding downstream 14707 7915519 ~ 7917730 (+)
G98185 NA non-coding downstream 119762 8020574 ~ 8096610 (+)
G98237 LOC108429911,LOC108429926,LOC108265257 non-coding downstream 336778 8237590 ~ 8244865 (+)
G98240 NA non-coding downstream 347043 8247855 ~ 8257070 (+)
G98234 NA non-coding downstream 376258 8277070 ~ 8277823 (+)
G97931 NA other upstream 760966 7127804 ~ 7130809 (+)
G97926 NA other upstream 821646 7068688 ~ 7070129 (+)
apoc1 NA other upstream 825746 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 1210084 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 1326772 6532516 ~ 6565003 (+)
G98636 NA other downstream 1411594 9312406 ~ 9312803 (+)
G98840 NA other downstream 2095392 9996204 ~ 10002046 (+)
G98845 NA other downstream 2159621 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 2271741 10172553 ~ 10178459 (+)
G98967 NA other downstream 2592979 10493791 ~ 10498518 (+)

Expression


Co-expression Network