LOC103021308 (LOC108429924,LOC108265369,LOC107699476,LOC107714672,LOC107595349)


Basic Information

Item Value
gene id LOC103021308
gene name LOC108429924,LOC108265369,LOC107699476,LOC107714672,LOC107595349
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8144964 ~ 8150644 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250811.3
GAGTGGGTGGACAGAAGGAGCGCGAGCGCAGAGAGGATGTAACTTCAGACCTGCAGGCAGTGGGTCAGTCTGTCGTTCAGAGAGTTTCAGTAAAACGCGTTTTCTGCTTTAACAGTAAACTGTAATAATGCAGTCAGTCGTGTTTTAGCTCTCTGTGGATTTCTGAGGTGAACAGCTCAGCTTTCAGAAGATCTGAGGATTTTATAAGAAGGTTTAGGATACAATGATGGAGACATCTTCAACCTCTACTCTGGTGTGGTTTCCAAACAGCACGACGGAGATGTCTTACTTTCAGAGTAACAGCTCTAGAAACGGATCAGAAGAAGACTATGACTATGACTATGAAGACGAGCATGCAGAACTCAGAAAGGCACTTAACATCATGTCAATCATAGTCTACTGCATGGCCTTCGTGCTCGGAGTGGTCGGGAACGGCATCGTAATCTGGGTGGCGGGTTTCAGAATGAAAAAGACGGTAAACACGGTCTGGTTTCTCAACCTGGCTGTGGCGGACTTCCTGTTTACCGCCTTCCTGCCCCTCAGCGTGGCCTACACTGCCATGTACTTCCATTGGCCTTTCGGGCGCTTCATGTGCAAACTCAACAGCACCCTCAGCTTCCTCAACATGTTCGCCAGTGTGTACATCTTGGTGGTGATCAGCGTGGACCGTTGTATATCTGTGGTGCGTCCCATATGGGCACAGAACCATCGCAGCGTCAGCCGTGCGTCCCTGTTGAGCATCATGGTCTGGGTTTTTGCTTTGCTGTTGAGTTCTCCCTACTTCGCCTTCAGGGACACTGCGCCAGCCCAAGAGAACGAGAACGCGATCATCTGCTATAACAACTTTGCCTTCTCAGATGACTACGAGAACGAGGAAGTGGTAAAGCTCCGTGTCTTGCGGCACCGCGCCATGATCATCACGCGCTTCCTGCTGGGGTTTGTCATACCTTTTTCCATCATTGTCTCCTGTTACGCAGTCATTGTCCAGCGCCTCAAAAGGAACCGCTCCATGTCTGGCCGCACCAGGCGCCCCTTCAGGATAATCGCCGCTGTGATCATTGCATTCTTCCTGTGCTGGGCTCCGTACCACATCCTGGTGCTGATTGAGATGGTTAACCACATGTCAATCGAAGAGAACTCCACCCTGGAGCATATCACCATCATCGGCATCCCCATCGCCACCAGCTTGGCATTCCTCAACAGCTGCCTGAACCCACTGTTGTACGTGTTTGTTGGTCAGCATTTTAAAGACAAGGTGCGGAAGTCTGTCCTGAAAGTTATGGAGAGGGCCCTCACCGAAGAGGTGTCTCGCACTAACGGCTGTACAACCTCCATGATTACCACCAAGAGCAAAGAGCAAGCGAGCAAATCGTTTTCCGATATCGAAGTATAAGGGACAGATGCGAGTCCTGTCTTCTTGAAGAGAATTTGCTCTGTTGCAATATTGACTATTCCTTAAAATGTTAAGGAAAACATCAAGTAGTCTTTGATTTGGGTGTTTTTCCAAAGTCAAACACATGTTGACAACTTCAAGACAAAAAGTCTTGACCTGAAGCTACAAAACTGGGACTTCTAATGGAGCACTCTCTTACAACTTATGCCACTCTTTGCCATCATATGGACAGTTTAAAACAAATATGGACTCTGAAAAGAGAGATAGGATTTGGTCTGCTGCAATATTGACTATTCCTCAaaattttaaggaaaacatCTGAAGTAGTCTTTGATTCAGGTTTTTTTCCAAAGTCAAATACATGTTGAAAATTTACGAAAAAGTCTTGACCTGAAGCTACAAAACTGGAACGTCTAATGGAGCACTCTCTTAGAACTTATGCCACTCTTTGCCATCATATGgacagtttaaaaaacaaatatgaacTCGAAAAGAGAGATTGGCTTTGGTCATTTCTTAAATACAAGATATTATCAGTTATCAATTATTTGGCATCACTTAAACTTCACAATAcaatttatactttatattgtgGTATGGATATCATTGTATCTGTCATGTGcttgtaaagaaaacaagtattGACTAAATATGAAACCGATCTAGATGGATTTTTGTCTTCTTGTTGGGTTAATTCTTCATCTATTCCAGGACTCTGGCTAATTCCAGCTacatatttctcttttaaaaatcattttaggtTGTTTTCCAAAGAAGGATTTAAGCCCAGACTACATTAgactacatttatttttaatgacaaTTTTAATCTCCTTTCACAATTCTGTAAAGTCCAGGACGAGGCTTAATAACTGGGATTAATCTGGGAAACCAACACTTTATGTCAACCAAGATTCATCAGTGTGTTTTCTACTGTCATCTACAAATTAAAAGGCAGCTTGTCTTGATTAAATCAATTGATCATTGGTCTAACGGTACAGATGGTAACATTACTTTTAtaaaacattacttttaattCTGCATTTGAGAAAGACATTAATATGCTGAAATACAGCTTCCACTGCCATATTTGGTACATGTTAACTGAAAAgcttatgttatgttatgttattttatgttttgaaaAGTGGCACACCTGTAAATAAACATCCAAAAAAATTGCCACATTTGAAACCACTTTGGTACAGtaaagtgcaaaaataaaagtgaaatgaGCTTTTTATTAGGGCTGCAAAATATACAGATTTAGCGTCAACATTGAGTGCAATGTTACATAAGCTAATTAAGACATGTACAGCATGCTTAACACGCTTAATACAAGGGGAAAATTCCCAGTCTCataattttcaaattttttcattaacttaacattaacattaacccAATATAATTTTTACTGCAATCTTTAATACACAAAAAGTATTATTGTCATTATCATAACTAGATCTGATGACAAAATCTCAATATATTTATGTCAGGTTTTCCACAACATTGCGCACTTCTACTTTCTATAGTGTAAAGGCCTTATTTGGATGTCATTTGTTTTACCCAAATATGTGGAAAAAAGCAATTATTACAAAAGGTTGCTGGTGACTAAACACGCCGTATtgtttgttcgtttttttttttttttactgtgcaaCCTCCAAACACTAGCCAAGGTACCCATTGGAGGCTTGAAGCTTTATTCCGTTGATTTTGTTGTGTAGCCTACATCCTACATATATGTTGTCAACATGTAGCAGCTAATTTTTAACCTTAACATTTGtaacattcattatttttatgtggGTTATAAAATTATCATCACATTTATGGAGGAGACAACAGTTCATAAATCGAGTAGCTACTCCCATTTCAGTTAGTTtcacaaagatttatttttctgaGAATCATTTATATATTCTTTTGACAATACTCCACCTCCCGAtgtaaaactaatcccatccaaatATTGTTTAACCCACCAGAAGCTCAGCCCCAGTTCTCTCCCCCATACAATCATACTATTCTCTCATTATGACTATATGCTATGTTATGTGTAACATGTTATGTGTTTGTCATATGTCAAAGATGTGGTGTAAATGTGTAACTCCAGCACTTGATGTTGTActtatcaaaataaaagtaccCCTTTTAGATGTGTATGCAATATTACATACACAGTTCTAGTA
>XM_007250812.3
AGAGTGGGTGGACAGAAGGAGCGCGAGCGCAGAGAGGATGTAACTTCAGACCTGCAGGCAGTGGGTCAGTCTGTCGTTCAGAGAGTTTCAGTAAAACGCGTTTTCTGCTTTAACAGTAAACTGTAATAATGCAGTCAGTCGTGTTTTAGCTCTCTGTGGATTTCTGAGGTGAACAGCTCAGCTTTCAGAAGATCTGAGGATTTTATAAGAAGGATACAATGATGGAGACATCTTCAACCTCTACTCTGGTGTGGTTTCCAAACAGCACGACGGAGATGTCTTACTTTCAGAGTAACAGCTCTAGAAACGGATCAGAAGAAGACTATGACTATGACTATGAAGACGAGCATGCAGAACTCAGAAAGGCACTTAACATCATGTCAATCATAGTCTACTGCATGGCCTTCGTGCTCGGAGTGGTCGGGAACGGCATCGTAATCTGGGTGGCGGGTTTCAGAATGAAAAAGACGGTAAACACGGTCTGGTTTCTCAACCTGGCTGTGGCGGACTTCCTGTTTACCGCCTTCCTGCCCCTCAGCGTGGCCTACACTGCCATGTACTTCCATTGGCCTTTCGGGCGCTTCATGTGCAAACTCAACAGCACCCTCAGCTTCCTCAACATGTTCGCCAGTGTGTACATCTTGGTGGTGATCAGCGTGGACCGTTGTATATCTGTGGTGCGTCCCATATGGGCACAGAACCATCGCAGCGTCAGCCGTGCGTCCCTGTTGAGCATCATGGTCTGGGTTTTTGCTTTGCTGTTGAGTTCTCCCTACTTCGCCTTCAGGGACACTGCGCCAGCCCAAGAGAACGAGAACGCGATCATCTGCTATAACAACTTTGCCTTCTCAGATGACTACGAGAACGAGGAAGTGGTAAAGCTCCGTGTCTTGCGGCACCGCGCCATGATCATCACGCGCTTCCTGCTGGGGTTTGTCATACCTTTTTCCATCATTGTCTCCTGTTACGCAGTCATTGTCCAGCGCCTCAAAAGGAACCGCTCCATGTCTGGCCGCACCAGGCGCCCCTTCAGGATAATCGCCGCTGTGATCATTGCATTCTTCCTGTGCTGGGCTCCGTACCACATCCTGGTGCTGATTGAGATGGTTAACCACATGTCAATCGAAGAGAACTCCACCCTGGAGCATATCACCATCATCGGCATCCCCATCGCCACCAGCTTGGCATTCCTCAACAGCTGCCTGAACCCACTGTTGTACGTGTTTGTTGGTCAGCATTTTAAAGACAAGGTGCGGAAGTCTGTCCTGAAAGTTATGGAGAGGGCCCTCACCGAAGAGGTGTCTCGCACTAACGGCTGTACAACCTCCATGATTACCACCAAGAGCAAAGAGCAAGCGAGCAAATCGTTTTCCGATATCGAAGTATAAGGGACAGATGCGAGTCCTGTCTTCTTGAAGAGAATTTGCTCTGTTGCAATATTGACTATTCCTTAAAATGTTAAGGAAAACATCAAGTAGTCTTTGATTTGGGTGTTTTTCCAAAGTCAAACACATGTTGACAACTTCAAGACAAAAAGTCTTGACCTGAAGCTACAAAACTGGGACTTCTAATGGAGCACTCTCTTACAACTTATGCCACTCTTTGCCATCATATGGACAGTTTAAAACAAATATGGACTCTGAAAAGAGAGATAGGATTTGGTCTGCTGCAATATTGACTATTCCTCAaaattttaaggaaaacatCTGAAGTAGTCTTTGATTCAGGTTTTTTTCCAAAGTCAAATACATGTTGAAAATTTACGAAAAAGTCTTGACCTGAAGCTACAAAACTGGAACGTCTAATGGAGCACTCTCTTAGAACTTATGCCACTCTTTGCCATCATATGgacagtttaaaaaacaaatatgaacTCGAAAAGAGAGATTGGCTTTGGTCATTTCTTAAATACAAGATATTATCAGTTATCAATTATTTGGCATCACTTAAACTTCACAATAcaatttatactttatattgtgGTATGGATATCATTGTATCTGTCATGTGcttgtaaagaaaacaagtattGACTAAATATGAAACCGATCTAGATGGATTTTTGTCTTCTTGTTGGGTTAATTCTTCATCTATTCCAGGACTCTGGCTAATTCCAGCTacatatttctcttttaaaaatcattttaggtTGTTTTCCAAAGAAGGATTTAAGCCCAGACTACATTAgactacatttatttttaatgacaaTTTTAATCTCCTTTCACAATTCTGTAAAGTCCAGGACGAGGCTTAATAACTGGGATTAATCTGGGAAACCAACACTTTATGTCAACCAAGATTCATCAGTGTGTTTTCTACTGTCATCTACAAATTAAAAGGCAGCTTGTCTTGATTAAATCAATTGATCATTGGTCTAACGGTACAGATGGTAACATTACTTTTAtaaaacattacttttaattCTGCATTTGAGAAAGACATTAATATGCTGAAATACAGCTTCCACTGCCATATTTGGTACATGTTAACTGAAAAgcttatgttatgttatgttattttatgttttgaaaAGTGGCACACCTGTAAATAAACATCCAAAAAAATTGCCACATTTGAAACCACTTTGGTACAGtaaagtgcaaaaataaaagtgaaatgaGCTTTTTATTAGGGCTGCAAAATATACAGATTTAGCGTCAACATTGAGTGCAATGTTACATAAGCTAATTAAGACATGTACAGCATGCTTAACACGCTTAATACAAGGGGAAAATTCCCAGTCTCataattttcaaattttttcattaacttaacattaacattaacccAATATAATTTTTACTGCAATCTTTAATACACAAAAAGTATTATTGTCATTATCATAACTAGATCTGATGACAAAATCTCAATATATTTATGTCAGGTTTTCCACAACATTGCGCACTTCTACTTTCTATAGTGTAAAGGCCTTATTTGGATGTCATTTGTTTTACCCAAATATGTGGAAAAAAGCAATTATTACAAAAGGTTGCTGGTGACTAAACACGCCGTATtgtttgttcgtttttttttttttttactgtgcaaCCTCCAAACACTAGCCAAGGTACCCATTGGAGGCTTGAAGCTTTATTCCGTTGATTTTGTTGTGTAGCCTACATCCTACATATATGTTGTCAACATGTAGCAGCTAATTTTTAACCTTAACATTTGtaacattcattatttttatgtggGTTATAAAATTATCATCACATTTATGGAGGAGACAACAGTTCATAAATCGAGTAGCTACTCCCATTTCAGTTAGTTtcacaaagatttatttttctgaGAATCATTTATATATTCTTTTGACAATACTCCACCTCCCGAtgtaaaactaatcccatccaaatATTGTTTAACCCACCAGAAGCTCAGCCCCAGTTCTCTCCCCCATACAATCATACTATTCTCTCATTATGACTATATGCTATGTTATGTGTAACATGTTATGTGTTTGTCATATGTCAAAGATGTGGTGTAAATGTGTAACTCCAGCACTTGATGTTGTActtatcaaaataaaagtaccCCTTTTAGATGTGTATGCAATATTACATACACAGTTCTAGTA

Function

NR:

description
PREDICTED: chemokine-like receptor 1

GO: NA

KEGG:

id description
K04245 CMKLR1; chemokine-like receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250811.3 True 3588 mRNA 0.40 2 8144965 8150644
XM_007250812.3 False 3583 mRNA 0.40 2 8144964 8150644

Neighbor

gene id symbol gene type direction distance location
spaca6 NA coding upstream 70567 8060963 ~ 8074397 (+)
smg9 smg9,LOC107699520,LOC107595308 coding upstream 244152 7891775 ~ 7900812 (+)
LOC111193438 NA coding upstream 263373 7869033 ~ 7881591 (+)
LOC103045356 ywhabl,LOC107723438,LOC107570839,LOC108265441,LOC107595301,LOC108429958,LOC105896388 coding upstream 278369 7848099 ~ 7866595 (+)
LOC103045564 LOC107570829 coding upstream 385168 7736322 ~ 7759796 (+)
LOC103023078 NA coding downstream 2815 8153459 ~ 8168108 (+)
LOC103022775 NA coding downstream 22911 8173555 ~ 8197686 (+)
LOC103021850 NA coding downstream 49893 8200537 ~ 8213872 (+)
LOC103023603 NA coding downstream 65605 8216249 ~ 8221846 (+)
LOC103024130 NA coding downstream 72868 8223512 ~ 8229970 (+)
G98185 NA non-coding upstream 48354 8020574 ~ 8096610 (+)
G98133 NA non-coding upstream 227234 7915519 ~ 7917730 (+)
G98115 NA non-coding upstream 309760 7781558 ~ 7835204 (+)
G98117 NA non-coding upstream 351637 7791023 ~ 7793327 (+)
G97988 NA non-coding upstream 383140 7761185 ~ 7761824 (+)
G98237 LOC108429911,LOC108429926,LOC108265257 non-coding downstream 86946 8237590 ~ 8244865 (+)
G98240 NA non-coding downstream 97211 8247855 ~ 8257070 (+)
G98234 NA non-coding downstream 126426 8277070 ~ 8277823 (+)
G98232 NA non-coding downstream 127360 8278004 ~ 8279202 (+)
G98248 NA non-coding downstream 185782 8336426 ~ 8338117 (+)
G97931 NA other upstream 1014155 7127804 ~ 7130809 (+)
G97926 NA other upstream 1074835 7068688 ~ 7070129 (+)
apoc1 NA other upstream 1078935 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 1463273 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 1579961 6532516 ~ 6565003 (+)
G98636 NA other downstream 1161762 9312406 ~ 9312803 (+)
G98840 NA other downstream 1845560 9996204 ~ 10002046 (+)
G98845 NA other downstream 1909789 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 2021909 10172553 ~ 10178459 (+)
G98967 NA other downstream 2343147 10493791 ~ 10498518 (+)

Expression


Co-expression Network