LOC103021850


Basic Information

Item Value
gene id LOC103021850
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8200537 ~ 8213872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250813.3
aggTGCAGCCTGCTGAGAAAACCTGCCCGCGCGCTCTGCTTTACTAACCCACGCCTAGCAGGGACGAGGCAGCTGCCCAATACAGTCTGCTGCTCGCTCGCACGCTCGCGCCCTAACAATGTGCGGCTAGCCGGAGCACTGGCGGGCAGGCGGGCTGCAGGCCGGGCTCAGCCGCTCTGAGTGCGGTTAACTCGCGAACAGCGCGGTTAGGAGGCTGTAGAGAAGCGGCGCAGGCCTGATGCTTCGCGGGGTGCTGGTGACCCTGCCGACAGTCATTTGCTttaactTCTGAGTGAACAACCTCAAAACAACAAGTCAAAATGCTTGGTCTTCAAGAAACCAGATCTGCTGGAACTCCCTCCACCAAGACCTATAATTGTGTGGCATGTTCAGCCACATTCAATGGTTTAGCATCTCTATTAGTGCATCAAGCCTCTCATGCCAGTGAAATCTCCGACCACAAAGTGTCTGCTTTGCCTACTTGCAGTCACTGCAGTGGTTTGTTTGCAAGCAAAGAACTTCTGGACAAGCACCAGTGCATGGTGTTGCCCCCTCCTGTTGCTCCAGATGTGCACAAGAAGGAACATGAAATGAATACACAGGTAAAGCCTCAGGTGGGTGAGCCAAGTATTACAAATTCCGAAGCAGAACTTGAAGACAGCTTGAAGACGGCTTGCAGCCATGATGCCCCAGTTGAAGTTCCCTCACAAGAGACCATCACTCAAGAGCATATGGATGTTGGGTTGCAGCCATCTGATTCACCTACATGCATACCTATCTTAGATTTACCTCCTGTGCAAGACATTGTTGCTCAAGAGCATATTGAGGAGTTGCAGCTATTGGACCCCTCCACATGCATACCTAACTTAGATTTACCTCCTGTGAAAGAAACCGTCACTACAGAGCATCTAGATGATGGGTTGCAGTCATGTAATCCGTCTGCATGTATACCCATCTCAGATGTACCTCCTGTGCAGGAGACCATCACACAAAAGCATATGGATGATATGTTGCAGCCATTTGATCCGTCAGCATGCGTACCTATCTCAGATTTACCTCCTGTACAAGACACTGTTGCTCCAGAGCATATCGAGGAGTTGCAGCTATTGGACCCCTCCACGTGCTTACCTATCTTAGATTTACCTCCTGTGAAAGAAACCATCACTACAGAGCATCTGGATGATGGGTTGCAGCCATCTGATCCACCTGCATGTATACCCGTCTCAGATTTAACTCCTGCGCAAGACACTATCACTCAAGAGCATCTTGATGATGGCTTACAGTCATCGGAACCCTCCATACCTGAAACGCTCGCAGTAGGAGACCAATCTTTTGCAAGTGAAGCTAAGAAGATAAAATTGGAGAATCTGAGCAATCACTCTGACAGTGAAGAATCAGCAAATGAAAGCGAGAGATCAGACTCGAAGAAATCGCTGCTTAAAATGCTTGCATCTGCCTACCTGAACCGCAGGCCGCCAGCTCAAATACAATTGGAGCAAAGCAAGAGGACCCTTCCCCCACGAAAGGTTTCACCAAGAGCACCAATACAGAACCCAGCAGTAATATCCACTTCAAGCTCTTCAAATTTCATGGACCAATTAAGACAAAAGATGGCTAAATTTGGCCCTAATAGAGAGGGCGTCAAGCAGGCCGGCGGCATTGGGAAAGTCAagcctaaaaagaaaaaattaaaaaggattATCTCTACAACCAAAATATTATATCCTATAGTGGCTCTTGAGTCCTGTCAAAAAAGCTTGCAGGACAACATGGAGGGGAGGCATCAGTGTGGTGTCTGCAGCAGAGTTTTTCAAGACGTGGACAGCTTGATAATGCATCATGCCTTGCACAAAAAGGAACGTGTGAAATTTTGCCGTCGCTGCCGGCAGTATTTGATCTGTGTCATTTCTGTTCCAAACAATCACGTCTGTTCTATCTCGAATATAGGGCCGTCCAGACATTTTACATTTGTAAGGAAAAGCTTCCTGACCTCAAACAACCCTACAATGCTTCACTCTCGGAAAATGTTCCACTGTACAATGTGCAATCGGAGCTATACACGCAGGCACAGCCTCAACAAACACAACTGTCAGTGGATAGCCTCTCTTAAGTCCTCTGCCACTGCAGCCAAACAAGCTGAGAATTTCCACAGCTTGGGTGAAGGATCTAGTGCTGGAAAAGGACTTGTGTCATCCGAGCAGATAAGTGTTGGTGTGAACACAGGCAAACTTCAGATTGTAAAGTCTGAGGATCTCCGTGCTGATTTCCCTAACAAGGAGACAAGGTTAGTGCAGAAACCTTCCCCTGTCAAGTCAAACATTCACTCTGGTTCCGCCAAGAGTTTCCCACCGTTTCTTGCCAACGTTTCTAAAATCAATTCAGCAAAGTTAAACGTCAACTTTAATTCAGCTGGGCCTACATCTTCCCGACTTAGAGAAAGAAATATCAGAAAGGGAAGTGAATCAGAATTAGACGAGAGCCAGTGGACAGTGCCTTTGGATGACAATGAAATTGAAGTGATGGACGTTGATGAAGGAAAGCGTGATTCGGTGGTGGCACCCAAGAACAACTCTGAtgatgatgttattttagaacCTACCGTTAAAAGTCAACCCAGCTTGCTCCTTTCAGGTAGAGAATTTCAAGTGCACATCTCTGAAAAGGGTGTAAAGCGTTTTTCTTGTAACAGATGTAACAGAAGCTATTCCCGCCATTTCACTGTACAGCAGCACCTTAAGATTTGTAGTGCAAGAAAACTGAGAGAGCAACATTCTTTTGGAAAGGCCGGTATCCTTGCCCTGAAGAAGAAGTTTCCGTGTCCACTTTGCAGTGCATCATTTACCCGGAAAGACCGCATGAACATGCATAGAAAGAGATGCCAGGCAATGAGAAACCCCACCATGTTGGCGGGTAATAGGATGTTGGAGAAGAAAAATGAAGCACCCCAGGGAAACATGTTTGTGTTGCCCCCAGCAGCTAAGAACGACGTCAGACAGGATAACAATAAAACCAGTGCTGGCAGTGGAAACTGGGGGATTATGTCATTACCCTCTGTGCTTCCCAGAAAAGTGACCTGCGAGTGTGGTGCAGTATTCACTTGCCCAAGACTTCTGTTCGAGCATCTGCAGTTGCATGCAATGGAGTCGTACATTTGCTCCCATTGTGGTGAAAATCTGAAGTCTTGGGCCGAGCTTGAAGCGCACCAGAAACTGCATACGCAGGCACAAGTACAGCCTCAGCAAAAGCAACAATTTCAAACATCGAGTCAAAGTGTAAAAAGCCAGCCTCAAGATGTGTTGAAGTCACCTTTGAGTAACAGACCTCTCCCAGAAGGAAGCGTTTGCCACAGGTGTAAAAAGATCTTCAGAACGCGCAAGTCCATGCTGCGACATTTGAGGCTGAGTTGCAGAGGAGAAATTGCAGTTCAAAAGAATCACACTTGCTCTCGCTGTGGAATGACTTTCCAAAGTCAGTTAGCCCATAAGGTTCACGTTCAGAGCAACAGTTGCACCCCATCTTACAAACCTATTCGCTGCCCAGTTTGCGTACGCTGGTTCAGTTCCGTGGATggacttaaaaaacatttgcttACACACAGCCAACAAAAGGTTTTGACGTGCCAGATCTGCAGGCATAAGTGCTCAAGCCATGAAGATCTTGAGGAACATAAAAGGAATATCCATGGCCCGAAGAAAGCTTCCGCATCACCGACTCTTCAGTCTGCACACGTTTCGCAAAGCAACCCATCAAATGCATTTCGTTGTCAGATATGTCAACGCACTTACCCAAAACTCCAGTCTCTGAAAGACCATTTGAGGAAAGTCCATCGACCGCAAGGCATAAACATGGTCAACCTTAGTGCTTTACAGCCCAAAGCTGGTGGACTTCCGTCATCAGCAGCAATGGTGCAGCAAAGCCAGTCCAAGCAGCTTCAGTGTACCATTTGTGCACGCACCTACCCAGATATTCAGTCCTTGAGAAACCACAGGCGAAGAGTCCATCGCATTCTTGGTAGTGGACTTCAGCCATCGAGAGGACCTGTACAGCAAAGCCATTTCAGTCAGTTTCAGTGTCACATTTGTTCACGCAGCTACCCAGACATGAGGTCCTTGAGAAACCACAGAAGGAGGGTCCACCGCCTTCTGGGTGGCCTTGAGATGTTCAAGGGAACGCTTGTTCAAAGCCTGGACAATCAGTATAAGTGCCACATATGCCAGCGTAGTTATCCGGATGTAACATCCTTCAAGAACCACAGAAGACGGGTGCACCATATTTTAGGGGAGGTACCTGACACAGCAAAAATGGCTGCACCAGACATTGTAGAGTTAAAGGAAGAGCCAGAAATGCTTCCCGTCATATCGCTCGATGGACCCCAAACACGATGAGTGACCGTCAGCCATTTAACCAGTTTAATCCCAGCTGAGGATGTTGATGTTTGTTCACCGAAcctcttcttctgttttttttttttttttgttctggaaAGTAGTTGGAAAGTGTTGAATCgtgatagtgtgtgtatataatggaCATTTAGTAAAGCAGAGACCCTTTCTTAACTTTCAAGTTGTTTGTGCCCATAAAGTGTAAATACTCATCCCTATGTTGTTCTAACGCATACCTGGTAGCTGTTTAAAAAGAAGTTATTGACAAATGCATGCAGAGCTTAAAAAGCAGAACCATTGTAGATaaagttttgttatttttttgttacttttgtgCGTTGTCAGTGTATTGACAGTAACAGTGTCCATGAAAACTTGTTTTGAAGCATCAGTTGCTCTATGCTGTATCAATAAATACTGTGCTTACTGTTCTTAATTTTGTATTAATCGTTGGTTATGCATGCTTAGTAAATGTGGCACCGCAATAAAGCAATGTTTACTTGAGTGAA
>XM_007250815.3
AGGCGTGTGATCAGTCTTGTGGGAATATCTCAGAGGGCTTCCTTCCTCCCCTCCACAGTGGATTGGACTTTGGTGCAGCCCTGGGAGGCTTCGCATTCTCAACAAAGCTGGACCTGGATGCAGCCTGCCTGATGCTTCGCGGGGTGCTGGTGACCCTGCCGACAGTCATTTGCTttaactTCTGAGTGAACAACCTCAAAACAACAAGTCAAAATGCTTGGTCTTCAAGAAACCAGATCTGCTGGAACTCCCTCCACCAAGACCTATAATTGTGTGGCATGTTCAGCCACATTCAATGGTTTAGCATCTCTATTAGTGCATCAAGCCTCTCATGCCAGTGAAATCTCCGACCACAAAGTGTCTGCTTTGCCTACTTGCAGTCACTGCAGTGGTTTGTTTGCAAGCAAAGAACTTCTGGACAAGCACCAGTGCATGGTGTTGCCCCCTCCTGTTGCTCCAGATGTGCACAAGAAGGAACATGAAATGAATACACAGGTAAAGCCTCAGGTGGGTGAGCCAAGTATTACAAATTCCGAAGCAGAACTTGAAGACAGCTTGAAGACGGCTTGCAGCCATGATGCCCCAGTTGAAGTTCCCTCACAAGAGACCATCACTCAAGAGCATATGGATGTTGGGTTGCAGCCATCTGATTCACCTACATGCATACCTATCTTAGATTTACCTCCTGTGCAAGACATTGTTGCTCAAGAGCATATTGAGGAGTTGCAGCTATTGGACCCCTCCACATGCATACCTAACTTAGATTTACCTCCTGTGAAAGAAACCGTCACTACAGAGCATCTAGATGATGGGTTGCAGTCATGTAATCCGTCTGCATGTATACCCATCTCAGATGTACCTCCTGTGCAGGAGACCATCACACAAAAGCATATGGATGATATGTTGCAGCCATTTGATCCGTCAGCATGCGTACCTATCTCAGATTTACCTCCTGTACAAGACACTGTTGCTCCAGAGCATATCGAGGAGTTGCAGCTATTGGACCCCTCCACGTGCTTACCTATCTTAGATTTACCTCCTGTGAAAGAAACCATCACTACAGAGCATCTGGATGATGGGTTGCAGCCATCTGATCCACCTGCATGTATACCCGTCTCAGATTTAACTCCTGCGCAAGACACTATCACTCAAGAGCATCTTGATGATGGCTTACAGTCATCGGAACCCTCCATACCTGAAACGCTCGCAGTAGGAGACCAATCTTTTGCAAGTGAAGCTAAGAAGATAAAATTGGAGAATCTGAGCAATCACTCTGACAGTGAAGAATCAGCAAATGAAAGCGAGAGATCAGACTCGAAGAAATCGCTGCTTAAAATGCTTGCATCTGCCTACCTGAACCGCAGGCCGCCAGCTCAAATACAATTGGAGCAAAGCAAGAGGACCCTTCCCCCACGAAAGGTTTCACCAAGAGCACCAATACAGAACCCAGCAGTAATATCCACTTCAAGCTCTTCAAATTTCATGGACCAATTAAGACAAAAGATGGCTAAATTTGGCCCTAATAGAGAGGGCGTCAAGCAGGCCGGCGGCATTGGGAAAGTCAagcctaaaaagaaaaaattaaaaaggattATCTCTACAACCAAAATATTATATCCTATAGTGGCTCTTGAGTCCTGTCAAAAAAGCTTGCAGGACAACATGGAGGGGAGGCATCAGTGTGGTGTCTGCAGCAGAGTTTTTCAAGACGTGGACAGCTTGATAATGCATCATGCCTTGCACAAAAAGGAACGTGTGAAATTTTGCCGTCGCTGCCGGCAGTATTTGATCTGTGTCATTTCTGTTCCAAACAATCACGTCTGTTCTATCTCGAATATAGGGCCGTCCAGACATTTTACATTTGTAAGGAAAAGCTTCCTGACCTCAAACAACCCTACAATGCTTCACTCTCGGAAAATGTTCCACTGTACAATGTGCAATCGGAGCTATACACGCAGGCACAGCCTCAACAAACACAACTGTCAGTGGATAGCCTCTCTTAAGTCCTCTGCCACTGCAGCCAAACAAGCTGAGAATTTCCACAGCTTGGGTGAAGGATCTAGTGCTGGAAAAGGACTTGTGTCATCCGAGCAGATAAGTGTTGGTGTGAACACAGGCAAACTTCAGATTGTAAAGTCTGAGGATCTCCGTGCTGATTTCCCTAACAAGGAGACAAGGTTAGTGCAGAAACCTTCCCCTGTCAAGTCAAACATTCACTCTGGTTCCGCCAAGAGTTTCCCACCGTTTCTTGCCAACGTTTCTAAAATCAATTCAGCAAAGTTAAACGTCAACTTTAATTCAGCTGGGCCTACATCTTCCCGACTTAGAGAAAGAAATATCAGAAAGGGAAGTGAATCAGAATTAGACGAGAGCCAGTGGACAGTGCCTTTGGATGACAATGAAATTGAAGTGATGGACGTTGATGAAGGAAAGCGTGATTCGGTGGTGGCACCCAAGAACAACTCTGAtgatgatgttattttagaacCTACCGTTAAAAGTCAACCCAGCTTGCTCCTTTCAGGTAGAGAATTTCAAGTGCACATCTCTGAAAAGGGTGTAAAGCGTTTTTCTTGTAACAGATGTAACAGAAGCTATTCCCGCCATTTCACTGTACAGCAGCACCTTAAGATTTGTAGTGCAAGAAAACTGAGAGAGCAACATTCTTTTGGAAAGGCCGGTATCCTTGCCCTGAAGAAGAAGTTTCCGTGTCCACTTTGCAGTGCATCATTTACCCGGAAAGACCGCATGAACATGCATAGAAAGAGATGCCAGGCAATGAGAAACCCCACCATGTTGGCGGGTAATAGGATGTTGGAGAAGAAAAATGAAGCACCCCAGGGAAACATGTTTGTGTTGCCCCCAGCAGCTAAGAACGACGTCAGACAGGATAACAATAAAACCAGTGCTGGCAGTGGAAACTGGGGGATTATGTCATTACCCTCTGTGCTTCCCAGAAAAGTGACCTGCGAGTGTGGTGCAGTATTCACTTGCCCAAGACTTCTGTTCGAGCATCTGCAGTTGCATGCAATGGAGTCGTACATTTGCTCCCATTGTGGTGAAAATCTGAAGTCTTGGGCCGAGCTTGAAGCGCACCAGAAACTGCATACGCAGGCACAAGTACAGCCTCAGCAAAAGCAACAATTTCAAACATCGAGTCAAAGTGTAAAAAGCCAGCCTCAAGATGTGTTGAAGTCACCTTTGAGTAACAGACCTCTCCCAGAAGGAAGCGTTTGCCACAGGTGTAAAAAGATCTTCAGAACGCGCAAGTCCATGCTGCGACATTTGAGGCTGAGTTGCAGAGGAGAAATTGCAGTTCAAAAGAATCACACTTGCTCTCGCTGTGGAATGACTTTCCAAAGTCAGTTAGCCCATAAGGTTCACGTTCAGAGCAACAGTTGCACCCCATCTTACAAACCTATTCGCTGCCCAGTTTGCGTACGCTGGTTCAGTTCCGTGGATggacttaaaaaacatttgcttACACACAGCCAACAAAAGGTTTTGACGTGCCAGATCTGCAGGCATAAGTGCTCAAGCCATGAAGATCTTGAGGAACATAAAAGGAATATCCATGGCCCGAAGAAAGCTTCCGCATCACCGACTCTTCAGTCTGCACACGTTTCGCAAAGCAACCCATCAAATGCATTTCGTTGTCAGATATGTCAACGCACTTACCCAAAACTCCAGTCTCTGAAAGACCATTTGAGGAAAGTCCATCGACCGCAAGGCATAAACATGGTCAACCTTAGTGCTTTACAGCCCAAAGCTGGTGGACTTCCGTCATCAGCAGCAATGGTGCAGCAAAGCCAGTCCAAGCAGCTTCAGTGTACCATTTGTGCACGCACCTACCCAGATATTCAGTCCTTGAGAAACCACAGGCGAAGAGTCCATCGCATTCTTGGTAGTGGACTTCAGCCATCGAGAGGACCTGTACAGCAAAGCCATTTCAGTCAGTTTCAGTGTCACATTTGTTCACGCAGCTACCCAGACATGAGGTCCTTGAGAAACCACAGAAGGAGGGTCCACCGCCTTCTGGGTGGCCTTGAGATGTTCAAGGGAACGCTTGTTCAAAGCCTGGACAATCAGTATAAGTGCCACATATGCCAGCGTAGTTATCCGGATGTAACATCCTTCAAGAACCACAGAAGACGGGTGCACCATATTTTAGGGGAGGTACCTGACACAGCAAAAATGGCTGCACCAGACATTGTAGAGTTAAAGGAAGAGCCAGAAATGCTTCCCGTCATATCGCTCGATGGACCCCAAACACGATGAGTGACCGTCAGCCATTTAACCAGTTTAATCCCAGCTGAGGATGTTGATGTTTGTTCACCGAAcctcttcttctgttttttttttttttttgttctggaaAGTAGTTGGAAAGTGTTGAATCgtgatagtgtgtgtatataatggaCATTTAGTAAAGCAGAGACCCTTTCTTAACTTTCAAGTTGTTTGTGCCCATAAAGTGTAAATACTCATCCCTATGTTGTTCTAACGCATACCTGGTAGCTGTTTAAAAAGAAGTTATTGACAAATGCATGCAGAGCTTAAAAAGCAGAACCATTGTAGATaaagttttgttatttttttgttacttttgtgCGTTGTCAGTGTATTGACAGTAACAGTGTCCATGAAAACTTGTTTTGAAGCATCAGTTGCTCTATGCTGTATCAATAAATACTGTGCTTACTGTTCTTAATTTTGTATTAATCGTTGGTTATGCATGCTTAGTAAATGTGGCACCGCAATAAAGCAATGTTTACTTGAGTGAA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250813.3 True 4894 mRNA 0.46 3 8200728 8213872
XM_007250815.3 False 4787 mRNA 0.45 3 8200537 8213872

Neighbor

gene id symbol gene type direction distance location
LOC103022775 NA coding upstream 2851 8173555 ~ 8197686 (+)
LOC103023078 NA coding upstream 32429 8153459 ~ 8168108 (+)
LOC103021308 LOC108429924,LOC108265369,LOC107699476,LOC107714672,LOC107595349 coding upstream 49893 8144964 ~ 8150644 (+)
spaca6 NA coding upstream 126140 8060963 ~ 8074397 (+)
smg9 smg9,LOC107699520,LOC107595308 coding upstream 299725 7891775 ~ 7900812 (+)
LOC103023603 NA coding downstream 2377 8216249 ~ 8221846 (+)
LOC103024130 NA coding downstream 9640 8223512 ~ 8229970 (+)
LOC103024656 si:ch211-261d7.3,LOC108429975,LOC107714745,LOC107699514 coding downstream 57642 8271514 ~ 8276611 (+)
LOC103025184 LOC108265385 coding downstream 69274 8283146 ~ 8287986 (+)
LOC103044944 NA coding downstream 76858 8290730 ~ 8294447 (+)
G98185 NA non-coding upstream 103927 8020574 ~ 8096610 (+)
G98133 NA non-coding upstream 282807 7915519 ~ 7917730 (+)
G98115 NA non-coding upstream 365333 7781558 ~ 7835204 (+)
G98117 NA non-coding upstream 407210 7791023 ~ 7793327 (+)
G97988 NA non-coding upstream 438713 7761185 ~ 7761824 (+)
G98237 LOC108429911,LOC108429926,LOC108265257 non-coding downstream 23718 8237590 ~ 8244865 (+)
G98240 NA non-coding downstream 33983 8247855 ~ 8257070 (+)
G98234 NA non-coding downstream 63198 8277070 ~ 8277823 (+)
G98232 NA non-coding downstream 64132 8278004 ~ 8279202 (+)
G98248 NA non-coding downstream 122554 8336426 ~ 8338117 (+)
G97931 NA other upstream 1069728 7127804 ~ 7130809 (+)
G97926 NA other upstream 1130408 7068688 ~ 7070129 (+)
apoc1 NA other upstream 1134508 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 1518846 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 1635534 6532516 ~ 6565003 (+)
G98636 NA other downstream 1098534 9312406 ~ 9312803 (+)
G98840 NA other downstream 1782332 9996204 ~ 10002046 (+)
G98845 NA other downstream 1846561 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 1958681 10172553 ~ 10178459 (+)
G98967 NA other downstream 2279919 10493791 ~ 10498518 (+)

Expression


Co-expression Network