LOC103028148 (tomm40,LOC108438269,LOC107723430,LOC108272680,LOC107699493,LOC107657699)


Basic Information

Item Value
gene id LOC103028148
gene name tomm40,LOC108438269,LOC107723430,LOC108272680,LOC107699493,LOC107657699
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8591025 ~ 8600712 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250834.3
GGGCGGGTCTACTTGTCAGCCGTCAGTAGGTTGTGCCATAACAGTGTACCGGCGCTCCGTAGCCGAAGAACTGGACTGCAGCATTGCACAACcaTGGGCAGTGTGTTGGCTGCCACCTCCCCAAACCCCCCTGCTTCAGGGGGCAGTGGCACCCAAGCGGGCCCTGGACTGGTCACAGTGCCTCCAGGGTTCACCATGCCCCCAGTGTCTCCGGCCCCATCTTCCTCAGGCATGAGCGGCCAGGCTGGGACAGACACAGAGCCCCCTCTGCCCAACCCTGGGACGTTTGAGGAGTGTCATCGGAAGTGCAAAGAGGTCTTCCCGATGCAGATGGAGGGCGTGCGGCTTGTGGTCAACAAGGGGTTAAGCAATCACTTCCAGGTTAGCCACACAGTGACGCTTAGTACTGTTGGAGAATCAGGTTACAGGTTTGGATCCACGTATGTTGGAAGCAAGCAAACTGGACCTGCTGAGTCTTTCCCTGTAATTGTTGGCGATATGGACAACACAGGCAGTCTAAATGCACAGATTATTCACCAGCTGACCACACACGTACGCTCCAAAGTGGCTATGCAGacacagcagcacaaGTTTGTTAACTGGCAGTGTGATGCAGAATATCGTGGAGAGGACTTCACTGCTGCTGTTACTCTCGGCAACCCAGACGTTCTTGTTGGATCTGGTATAATAGTGGCACATTATCTTCAGTCTCTGTCCCCTGCTTTGGCACTGGGTGGTGAGTTGGTTTACCACAGGAGACCAGGAGAAGAGGGTACAGTGACCTCGTTAGTGGGCAGGTATACAGGTAGCAACTATGTGGCTACATTGACTGTTGGAGGAGCTGGTGCACATGCATCGTACTACCACAAAGCTAATGACCAGTTACAAGTTGGCGTAGAGTTTGAGGCAAGCACACGGATGCAAGAAACAAGCGTGTCTTTTGGCTACCAGGTGGATCTCCCCAAAGCTAATCTTCTGTTTAAAGGTTCATTAGACAGTAATTGGGTGGTCGGAGCTACGCTGGAGAAGAAGCTGCTTCCACTCCCTCTGTCTCTGGCTCTCGGCGCCTTCCTCAACCACCGCAAGAACAAGTTCCAGTGCGGCTTCGGCGTCACCATCGGTTAGAGCAGCGCGGGCGTCTAAGGCTCAAAGCAGCTCCACCCCTCCACCAGGCTCGGACTGGTGTGGAGAGACAGGGGGACATGGACCAACAACGAAACTGAAACAGACTCGGAGGCACTCCGACAGTACCCCGATTTTACCCTACACAGACGGACCAGGCCAGAGAGCTGACCGGGCTAGCAAACTGACCAAGCtctcttctatctatctacaaacaaacaaacaaacaaaaaaaatcaggcaAAAAGCGACAGGTTGTGTTTGCAGATcatttttcttgtttacttACAATAATGGTGAGTCCAGGTTACGTGGAGATGCCTTTTTCATGTCTGCTCCTCGTCATTTCTGCAGTCTGTAGACACTGAAATAATTTCTTAAAGGGAAACGCATTATCATGTCATCCTTCTTGCTCCTGTTCAGAATGAGCAAGTGCATAAATTAAGTGCTCACTTTGAACAACGTCATTCAAAACTCACTTTTATTTAAGAGTGCTGTTGAGTTTCCTTACAAAAACAATCTTTCCCTACAAAAAAAGGCAGCGTTTCAGCAGCATTCTTcagatagcaaaaaaaaaaacaagcaacgATTAGGCAGGACTAACGGGGTCTACCATCTCCAAtcatactgtactctactgttaAGGAATGGAATAAGTCTCCGTGTCCCTTTGTCTCTAACCAGACATACAAAGCTGTCGAGAGTTTTGACAGGTAGTAGACGCCTgtctctttacttttttttttttttagttgaggCCTTGGGCCAAGTTTGTATGCTgggtttatatttttgttaatgatctcagtatttgtttttaaatcagaaaTCACTTTCTAACGCCACAAGTTCAAGACCTTATAACTGTAAATCAGTCTGAGAGAAATGAACGGAAAAATGtccacaacaacaaaaacagcttTAAGCCTAAATGTGTCTCCTTTGAACTGGATGAAATCTGCTTTATGTTCTTGGGTGCATTAAGggctgtgttcacactgcaggTAAAAGGGGTCCAAATCTCATTTTCTCACCAATTCCAGTGCTTATTTGAGgttgtatattttaaaagaaactttTATATCCAACATTTGTCTAAACAGTAGTTAATGCCCCTAAACACACATTCATGTAGCACTTAGAAAGAAAGAGCAGCAGTGCTTCaaatgaagtttcagtttcatgttCACCTTTACCAGCATCATCAGGAATGCTTTTGAGGTTtgtataaaaagtttttttggacGTTGTTGTAAAACTTTTAAGATGTGTTTCCCTTTTTAACACTGAGCCATTCAACTAAACCTtctaaaaagtttgaaaagcAACATCACTATGTGTCAAATCATACTCAATCAAATCATACTGATTAAGAGTGGGTTTAGAGAAGGGCTTTTACAATGTACCTCTGTATTGCACACtcaagaggggtatccagtttgTGGTGCTAAGTCTTAAATCTCTTTCCTCCACGAGACGTTATGTTGGtctttacacattctacaaatgacaaaaacagcaTGCACCTGTGCAGCAGTTACTCTGTGTAGTTCCAGTTAGTGTTTGAATGAGGAACTCTAGCTTCTTGTAACTAAGAAATTCCTACTGATGAGCTGATTGTCTAAATGAGAGAAATATCAGAGCCGCATTGCCATAAATCAGAAAAGATATGCATTGGATTTATTTCAATACCACATGTGAAAGTGATCCAAATTGGAACTGAAACTATTAGATTCAGACCACTTTTACCTGCAGCTGTGTGAACATAGTCAAGGAGACCTATTTCCTAGGTCAGGGGTGGGCAGCTTGGTCCTTAAGTTTGGTGACTTTTTTAGAAGCAGGACCCTATCACATTTTCCTTTCTAATagcaatatttaaaacaatttaaataatgcttttttttacatgatcaaattaaaataatttattttta
>XM_022674273.1
CTCATAACCGCACGCTCCCGCTGCCGGAGCCCCGCAATATCAGTTTAACCCGCGGTCCTCGCGCTTAGAGGCGGGAGGACCGAGTTATTACAGCCCGCACAGAGAAATACAGCCCGGTTTCCCCTTCCGAGTCCTCTcactagcagctaatgctaactagcagCTTCGGCTAACTAACCTACCGAGCGAGCGAGCCGTGGGGCCAGTCCTCAGAGCTGTGGCTAATCTAACACTTCTGCACCCGCTGGTTTAGAGCTGTAATACAGCAGcaTGGGCAGTGTGTTGGCTGCCACCTCCCCAAACCCCCCTGCTTCAGGGGGCAGTGGCACCCAAGCGGGCCCTGGACTGGTCACAGTGCCTCCAGGGTTCACCATGCCCCCAGTGTCTCCGGCCCCATCTTCCTCAGGCATGAGCGGCCAGGCTGGGACAGACACAGAGCCCCCTCTGCCCAACCCTGGGACGTTTGAGGAGTGTCATCGGAAGTGCAAAGAGGTCTTCCCGATGCAGATGGAGGGCGTGCGGCTTGTGGTCAACAAGGGGTTAAGCAATCACTTCCAGGTTAGCCACACAGTGACGCTTAGTACTGTTGGAGAATCAGGTTACAGGTTTGGATCCACGTATGTTGGAAGCAAGCAAACTGGACCTGCTGAGTCTTTCCCTGTAATTGTTGGCGATATGGACAACACAGGCAGTCTAAATGCACAGATTATTCACCAGCTGACCACACACGTACGCTCCAAAGTGGCTATGCAGacacagcagcacaaGTTTGTTAACTGGCAGTGTGATGCAGAATATCGTGGAGAGGACTTCACTGCTGCTGTTACTCTCGGCAACCCAGACGTTCTTGTTGGATCTGGTATAATAGTGGCACATTATCTTCAGTCTCTGTCCCCTGCTTTGGCACTGGGTGGTGAGTTGGTTTACCACAGGAGACCAGGAGAAGAGGGTACAGTGACCTCGTTAGTGGGCAGGTATACAGGTAGCAACTATGTGGCTACATTGACTGTTGGAGGAGCTGGTGCACATGCATCGTACTACCACAAAGCTAATGACCAGTTACAAGTTGGCGTAGAGTTTGAGGCAAGCACACGGATGCAAGAAACAAGCGTGTCTTTTGGCTACCAGGTGGATCTCCCCAAAGCTAATCTTCTGTTTAAAGGTTCATTAGACAGTAATTGGGTGGTCGGAGCTACGCTGGAGAAGAAGCTGCTTCCACTCCCTCTGTCTCTGGCTCTCGGCGCCTTCCTCAACCACCGCAAGAACAAGTTCCAGTGCGGCTTCGGCGTCACCATCGGTTAGAGCAGCGCGGGCGTCTAAGGCTCAAAGCAGCTCCACCCCTCCACCAGGCTCGGACTGGTGTGGAGAGACAGGGGGACATGGACCAACAACGAAACTGAAACAGACTCGGAGGCACTCCGACAGTACCCCGATTTTACCCTACACAGACGGACCAGGCCAGAGAGCTGACCGGGCTAGCAAACTGACCAAGCtctcttctatctatctacaaacaaacaaacaaacaaaaaaaatcaggcaAAAAGCGACAGGTTGTGTTTGCAGATcatttttcttgtttacttACAATAATGGTGAGTCCAGGTTACGTGGAGATGCCTTTTTCATGTCTGCTCCTCGTCATTTCTGCAGTCTGTAGACACTGAAATAATTTCTTAAAGGGAAACGCATTATCATGTCATCCTTCTTGCTCCTGTTCAGAATGAGCAAGTGCATAAATTAAGTGCTCACTTTGAACAACGTCATTCAAAACTCACTTTTATTTAAGAGTGCTGTTGAGTTTCCTTACAAAAACAATCTTTCCCTACAAAAAAAGGCAGCGTTTCAGCAGCATTCTTcagatagcaaaaaaaaaaacaagcaacgATTAGGCAGGACTAACGGGGTCTACCATCTCCAAtcatactgtactctactgttaAGGAATGGAATAAGTCTCCGTGTCCCTTTGTCTCTAACCAGACATACAAAGCTGTCGAGAGTTTTGACAGGTAGTAGACGCCTgtctctttacttttttttttttttagttgaggCCTTGGGCCAAGTTTGTATGCTgggtttatatttttgttaatgatctcagtatttgtttttaaatcagaaaTCACTTTCTAACGCCACAAGTTCAAGACCTTATAACTGTAAATCAGTCTGAGAGAAATGAACGGAAAAATGtccacaacaacaaaaacagcttTAAGCCTAAATGTGTCTCCTTTGAACTGGATGAAATCTGCTTTATGTTCTTGGGTGCATTAAGggctgtgttcacactgcaggTAAAAGGGGTCCAAATCTCATTTTCTCACCAATTCCAGTGCTTATTTGAGgttgtatattttaaaagaaactttTATATCCAACATTTGTCTAAACAGTAGTTAATGCCCCTAAACACACATTCATGTAGCACTTAGAAAGAAAGAGCAGCAGTGCTTCaaatgaagtttcagtttcatgttCACCTTTACCAGCATCATCAGGAATGCTTTTGAGGTTtgtataaaaagtttttttggacGTTGTTGTAAAACTTTTAAGATGTGTTTCCCTTTTTAACACTGAGCCATTCAACTAAACCTtctaaaaagtttgaaaagcAACATCACTATGTGTCAAATCATACTCAATCAAATCATACTGATTAAGAGTGGGTTTAGAGAAGGGCTTTTACAATGTACCTCTGTATTGCACACtcaagaggggtatccagtttgTGGTGCTAAGTCTTAAATCTCTTTCCTCCACGAGACGTTATGTTGGtctttacacattctacaaatgacaaaaacagcaTGCACCTGTGCAGCAGTTACTCTGTGTAGTTCCAGTTAGTGTTTGAATGAGGAACTCTAGCTTCTTGTAACTAAGAAATTCCTACTGATGAGCTGATTGTCTAAATGAGAGAAATATCAGAGCCGCATTGCCATAAATCAGAAAAGATATGCATTGGATTTATTTCAATACCACATGTGAAAGTGATCCAAATTGGAACTGAAACTATTAGATTCAGACCACTTTTACCTGCAGCTGTGTGAACATAGTCAAGGAGACCTATTTCCTAGGTCAGGGGTGGGCAGCTTGGTCCTTAAGTTTGGTGACTTTTTTAGAAGCAGGACCCTATCACATTTTCCTTTCTAATagcaatatttaaaacaatttaaataatgcttttttttacatgatcaaattaaaataatttattttta

Function

symbol description
tomm40 Predicted to enable protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein transport and transmembrane transport. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Human ortholog(s) of this gene implicated in cerebral infarction. Orthologous to human TOMM40 (translocase of outer mitochondrial membrane 40).

NR:

description
PREDICTED: mitochondrial import receptor subunit TOM40 homolog

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K11518 TOM40; mitochondrial import receptor subunit TOM40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250834.3 False 3056 mRNA 0.44 10 8591025 8600712
XM_022674273.1 True 3233 mRNA 0.45 10 8591145 8600712

Neighbor

gene id symbol gene type direction distance location
LOC103021731 LOC108438272 coding upstream 63668 8514063 ~ 8527357 (+)
tbc1d31 tbc1d31 coding upstream 83940 8482729 ~ 8507085 (+)
LOC103027501 NA coding upstream 109164 8476853 ~ 8481861 (+)
fbxo32 fbxo32,LOC107714740,LOC107723524,LOC107657681 coding upstream 132705 8443934 ~ 8458320 (+)
LOC103026621 klhl38,LOC108429983 coding upstream 157732 8428520 ~ 8433293 (+)
derl1 derl1,LOC107714924,LOC107699495,LOC107595682,LOC107736822,LOC107657695 coding downstream 6859 8607571 ~ 8621340 (+)
LOC111193442 LOC108438282 coding downstream 48241 8648953 ~ 8660268 (+)
LOC103029611 LOC108443721 coding downstream 87560 8688272 ~ 8700977 (+)
LOC103030255 dtnbp1,LOC107593648 coding downstream 122324 8723036 ~ 8733890 (+)
osbpl8 osbpl8,LOC107555879 coding downstream 157416 8758128 ~ 8795780 (+)
G98287 NA non-coding upstream 10095 8580573 ~ 8580930 (+)
G98286 NA non-coding upstream 11563 8579229 ~ 8579462 (+)
G98283 NA non-coding upstream 38645 8552063 ~ 8552380 (+)
G98282 NA non-coding upstream 48596 8541326 ~ 8542429 (+)
G98281 NA non-coding upstream 50518 8540001 ~ 8540507 (+)
G98285 nsmce2 non-coding downstream 2265 8602977 ~ 8607055 (+)
G98429 NA non-coding downstream 133259 8733971 ~ 8734240 (+)
G98430 NA non-coding downstream 135511 8736223 ~ 8736951 (+)
G98432 NA non-coding downstream 140748 8741460 ~ 8742448 (+)
G98436 NA non-coding downstream 149924 8750636 ~ 8751485 (+)
G97931 NA other upstream 1460216 7127804 ~ 7130809 (+)
G97926 NA other upstream 1520896 7068688 ~ 7070129 (+)
apoc1 NA other upstream 1524996 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 1909334 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 2026022 6532516 ~ 6565003 (+)
G98636 NA other downstream 711694 9312406 ~ 9312803 (+)
G98840 NA other downstream 1395492 9996204 ~ 10002046 (+)
G98845 NA other downstream 1459721 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 1571841 10172553 ~ 10178459 (+)
G98967 NA other downstream 1893079 10493791 ~ 10498518 (+)

Expression


Co-expression Network