krtcap2 (krtcap2)


Basic Information

Item Value
gene id krtcap2
gene name krtcap2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 6548755 ~ 6553281 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255933.3
TGTAGGTGGCAGCAACACAAGCCACAGCGGCCAGTCTGAAGGAATCTCTCACAGAAGAAGGGGACAGTGGTGAGAGCTGCCAGGATACCGGGATCAAATCTCACCTTTCGGATTAAACTATGGCGGTGAACACAGGGACGTCTCTGGTGTTGTCCAGCCTGTTGTCGGTGCTGGTCTTCGCAGGGATGCAGATGTTCAGCAGGCAGCTGGGTTCCTCAGAGTGGCTGACCATCCTGGGAGGCTTCCTGGGTTCAGTGCTGTTCGTCTGCTCCCTCACTGCCTTTAATAATCTGGAGAATCTTGTCTTTGGGAAAGGCTTCCAGGCAAAAATCTTCCCAGAGAttctgTTGTGCCTGTGTTTGTCCCTCTTCGCCTCTGGTTTGGTGCATCGTGTGTGTGTCACCACTTGTTTAATATTCTCACTTTTCGCTCTCTACTACATCAACAAAGTCTCTGCGGCTCTTTACCAGGCGGCCGCTCCTGTAGCAACCCCAGCCAAAACCACCAGCAAGGGCAAGAGGAAGAACTGAAGCACTTAAACTGCCTGTTATCGTCCAATCAGCTCCCACACAGcagcagccttttttttttttgtttgtttgttttttttatgaacttATTCTGATTTCTACATTCGTTAATGTCATAAAACAAACCAGTCGAGAGTTACTGAAACATCCCACCCAGATTAAAATGGAAATGCAGTTTAGTAGAGAGTTTTGTTAAGGacatgtatgtttgtatgtttacACCACTGTCTTGCAGTgttcatatataaaaataacagactGGCCAATTAAACAGTGAATTATCAATACACTCATGATCATGAGCTGTGTGTGAATCGTTTCTACGtacaaaatattttgttaaatgatttgttattaaaacaaaacaaaaaagacatcAAA

Function

symbol description
krtcap2 Predicted to be involved in protein N-linked glycosylation via arginine. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axis; cleithrum; liver; and polster. Orthologous to human KRTCAP2 (keratinocyte associated protein 2).

NR:

description
keratinocyte-associated protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255933.3 True 911 mRNA 0.44 5 6548755 6553281

Neighbor

gene id symbol gene type direction distance location
slc50a1 slc50a1,LOC106574309,LOC106606111,LOC107582072 coding upstream 53767 6486709 ~ 6494988 (+)
LOC103021450 efna1b,LOC108429932,LOC107595011,LOC107714705,LOC107699555,LOC108269829,LOC107582071,LOC106598406 coding upstream 65048 6456511 ~ 6483707 (+)
flad1 flad1,LOC100286671 coding upstream 419154 6117809 ~ 6129601 (+)
chrnb2 chrnb2,chrnb2b,LOC107594892,LOC107673697,LOC107714697,LOC107677024,LOC107582065 coding upstream 564513 5946355 ~ 5984242 (+)
she she,LOC107677035,LOC107723582,LOC107714680,LOC107673726,LOC107582163 coding upstream 613894 5922768 ~ 5934861 (+)
LOC111193433 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143 coding downstream 5584 6558865 ~ 6563536 (+)
LOC103022085 NA coding downstream 5596 6558877 ~ 6573750 (+)
LOC103023101 s10i,LOC100304668,LOC107582076,LOC106606010,LOC107657639 coding downstream 52223 6605504 ~ 6607954 (+)
snx27 snx27,snx27b,LOC108429939,LOC107699551,LOC107657641,LOC107714694 coding downstream 58437 6611718 ~ 6631736 (+)
LOC103021742 kcnn3,LOC108280396,LOC107595057,LOC107699550,LOC107723559,LOC107657645,LOC107714686 coding downstream 159140 6712421 ~ 6823042 (+)
G97674 NA non-coding upstream 27840 6508111 ~ 6520915 (+)
G97672 NA non-coding upstream 84535 6462566 ~ 6464220 (+)
G97639 NA non-coding upstream 389835 6154825 ~ 6158920 (+)
G97637 NA non-coding upstream 404873 6141717 ~ 6143882 (+)
G97624 NA non-coding upstream 483954 6063761 ~ 6064801 (+)
G97882 NA non-coding downstream 201460 6754741 ~ 6756061 (+)
G97883 NA non-coding downstream 203435 6756716 ~ 6757072 (+)
G97884 LOC103044954,LOC107599504,LOC103388254,LOC107589412,LOC101077558,LOC103356523,LOC108429942 non-coding downstream 220997 6774278 ~ 6850763 (+)
G97896 NA non-coding downstream 258240 6811521 ~ 6812360 (+)
G97870 NA non-coding downstream 271637 6824918 ~ 6827579 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other upstream 166038 6280322 ~ 6382717 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other upstream 698225 5807568 ~ 5850530 (+)
ndufaf6 ndufaf6 other upstream 1567808 4965470 ~ 4980947 (+)
LOC111193421 mboat1 other upstream 2649836 3864990 ~ 3898919 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other upstream 3110029 3389051 ~ 3438726 (+)
adar adar,LOC107723500 other downstream 101069 6654350 ~ 6681691 (+)
apoc1 NA other downstream 508851 7062132 ~ 7066029 (+)
G97926 NA other downstream 515407 7068688 ~ 7070129 (+)
G97931 NA other downstream 574523 7127804 ~ 7130809 (+)
G98636 NA other downstream 2759125 9312406 ~ 9312803 (+)

Expression


Co-expression Network