LOC103023101 (s10i,LOC100304668,LOC107582076,LOC106606010,LOC107657639)


Basic Information

Item Value
gene id LOC103023101
gene name s10i,LOC100304668,LOC107582076,LOC106606010,LOC107657639
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 6605504 ~ 6607954 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255934.3
GTCTAGAACGGTTGGAGCCAGAGGGTGTGGCAGCTCTAGTGCATAAAACAGCAGGTCCATCCCTCCTTCCATCACTCcctccttcttctctctctcttactcgtTGCTGGTCCAGGACTCCTGCAAACCTAAGaagccACCATGTCTCAGTTGCAGCAGGCCATGACTATGCTTATTAGCACCTTCCACAAGTACTCTGGCAAGGAGGGAGACAAGTTTACCCTGAGCAAGGGCGAGCTGAAGGACCTGCTCAACGCAGAGCTTAAAGAAATGTTCGGGCAAAGCAAAGACCAAGCGGCACTAGACAAGATCTTCAAAGACCTGGACGCTAACGCTGACGGAAGCGTGGACTTCCAGGAGTACGTCACCCTGGTGGCCTGCATCACCATGCTCTGCAACGAATTCTTCACAAAGAAATAGTGGAGAGAGGGACACACACTAGCCACGtgttacacatatatacacatctgTCATAcatataataagtaaaaaaaggtttgtttAAACATGATCTAAAAGTTTTAGCATTTTGTACAATGCAAAAGtttgaaataaactattttaatatgTGTTAATAAA

Function

NR:

description
ictacalcin

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23761 S100A4; protein S100-A4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255934.3 True 579 mRNA 0.45 3 6605504 6607954

Neighbor

gene id symbol gene type direction distance location
LOC103022085 NA coding upstream 31754 6558877 ~ 6573750 (+)
LOC111193433 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143 coding upstream 41968 6558865 ~ 6563536 (+)
krtcap2 krtcap2 coding upstream 52223 6548755 ~ 6553281 (+)
slc50a1 slc50a1,LOC106574309,LOC106606111,LOC107582072 coding upstream 110516 6486709 ~ 6494988 (+)
LOC103021450 efna1b,LOC108429932,LOC107595011,LOC107714705,LOC107699555,LOC108269829,LOC107582071,LOC106598406 coding upstream 121797 6456511 ~ 6483707 (+)
snx27 snx27,snx27b,LOC108429939,LOC107699551,LOC107657641,LOC107714694 coding downstream 3764 6611718 ~ 6631736 (+)
LOC103021742 kcnn3,LOC108280396,LOC107595057,LOC107699550,LOC107723559,LOC107657645,LOC107714686 coding downstream 104467 6712421 ~ 6823042 (+)
rab13 rab13,LOC107723501,LOC107714709 coding downstream 244829 6852783 ~ 6860824 (+)
fam189b fam189b coding downstream 253644 6861598 ~ 6879371 (+)
nbn NA coding downstream 277615 6885569 ~ 6905841 (+)
G97674 NA non-coding upstream 84589 6508111 ~ 6520915 (+)
G97672 NA non-coding upstream 141284 6462566 ~ 6464220 (+)
G97639 NA non-coding upstream 446584 6154825 ~ 6158920 (+)
G97637 NA non-coding upstream 461622 6141717 ~ 6143882 (+)
G97624 NA non-coding upstream 540703 6063761 ~ 6064801 (+)
G97882 NA non-coding downstream 146787 6754741 ~ 6756061 (+)
G97883 NA non-coding downstream 148762 6756716 ~ 6757072 (+)
G97884 LOC103044954,LOC107599504,LOC103388254,LOC107589412,LOC101077558,LOC103356523,LOC108429942 non-coding downstream 166324 6774278 ~ 6850763 (+)
G97896 NA non-coding downstream 203567 6811521 ~ 6812360 (+)
G97870 NA non-coding downstream 216964 6824918 ~ 6827579 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 40501 6532516 ~ 6565003 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other upstream 222787 6280322 ~ 6382717 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other upstream 754974 5807568 ~ 5850530 (+)
ndufaf6 ndufaf6 other upstream 1624557 4965470 ~ 4980947 (+)
LOC111193421 mboat1 other upstream 2706585 3864990 ~ 3898919 (+)
adar adar,LOC107723500 other downstream 46396 6654350 ~ 6681691 (+)
apoc1 NA other downstream 454178 7062132 ~ 7066029 (+)
G97926 NA other downstream 460734 7068688 ~ 7070129 (+)
G97931 NA other downstream 519850 7127804 ~ 7130809 (+)
G98636 NA other downstream 2704452 9312406 ~ 9312803 (+)

Expression


Co-expression Network