LOC103038511 (LOC103038511)


Basic Information

Item Value
gene id LOC103038511
gene name LOC103038511
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 11465165 ~ 11470103 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256500.3
CACCGCCGCTCAGCCGCTCGCGCTTCATGGCTGCTGCAGGCGAAAACTGTGTGTAAACACCAGGATTTCTGTtcaagaaaagtgtttttttagacTGTAGGGTTAAAATAAAGCTCAGACATCAGTCAGGAATGTTTCTATAGCTCCTAAATAGATTTTCTGTGCGGATCCTAATGGAGGTGGTGGAGAAACTGATTGCCGTGTCTGTGGACGTCATTCTGGCACTCTCAGCACTAAACGCTGCATTTCACCTGTTTAAGGATCACAGAGCTCCATCCGTAGGTTTCCTCCTCGTGGCATGTTCCTCTGCGCTGGCAGTTCTTCCTTTATCCGCCCCATCTCTCACAGCTGCCCAGAAGGATCTGGAATGGGCCGCCGAAGCTCTTGGTCCGGTTCTGTCCGCATTCGGGTTCCTGTGGCTCAGCCAGGACTGCTCCACCGCCTTTGTGCTTCTGCTTGGCTCCGCCCTTCTCCCACTGCTTGCTGATTGGCTGTCGGCAGACGGGTTGGTGGTCATGTCGCGCTGCGTGGGGTTATCGGCGCTCTCCTGCTCGCTGACCGTCTGCCTGTTCGCTGGAAATGCCCCCGGAGTGGTGGGCAGCGTGGCCCTCAGCCTGCCTGCTCTAGTGGCCCCCAGGGTCAGAGGTGCTGCCTTGGGCTCGATCACATCCCCACGGGCTGCCGGGGGGCTTCTGCGGTGGCTCCTCAAAGCCACTATGGCTGGAGGCTGCTGGACAACAAAGATGGCTCTGAAGAAATTCCTGCATGATCTGAAAGGCTGGGATTAAAGGGATGCTTTTATATTATCCTCATAAACTTACTTTTAGCTTGGAGCTACGAGGCTGATTTAGTTTACATAATGGCAGCTTATGTACACcagttagcatgatgctaaaaaaaaagaaaaagctatgGGAGGTGTGCTTGTCTCATTCACTGGCCTGTATGTATTTGATAATGTTTATTCGACCTTAAATGATAACACTGTTACCTTCTATCACTGAAAGCCTAAAATCAGCTTGATCATGTTCTCACAGCTCAACTTTAACCATCCACCAGGGTGGTTTAGGTGAAAGCAGTGCTTCTGTATTTATTAGGTTAAGTTTACATgtttacactattttttttttttttaagtgtgccttCGTCTCTGGCTCCTCCAGCACTCCAGCACCTGTTATGgccaacataataataatatttattaattaatagaacAGCTGCCTGCATACAGAAATAATGATGGGTGGAGCAAGACtgcatctgattggctaacatttcatgtttattttgttttgtgacctgatgtttattgtttaatcaCATTGTTTTAGGAATCTAGTGTTATCAAACGCTGGAGTCATCTTTTcatatatacagtggtatgaaagagtgtttgccccttacagatttttgatttctaacattttttagattattaaacaaactttaatatatatacaaatataaccaatgatgatttcatttattgaggggaaaaaatatCCATCCCTTAGTGAAAAATTAACTATGGTTAATCACACTTtatggaaagctgagttcaatttttctactagccacaaccaggcctgattactaacagacctgtagaatcaagaaatccctttaatagaacctgtctgacaacataaagcagctaaaagatctcaaataGCAATGCATTATGTCCCaaactgaagaaattcaaaatcaAATGAGAAAACAAGTCATTGACATCTGGAAAAgattacaaagtaatttctaggTCTTTgggcttaaaaaagcaaaattaaggttttggagtggccttaAACACCTTGAACAGGACGTTAATTTGCGAAAACTTTGAATATGGCTGAATTAAAGCacttttgtaaagaagaatggaccaCAATTCATGTAatagatgtgaaagactcatttactgttaaagtttgtttgaaaatggaaaaaatatcagtataacaaaaaaagcaaaaacaaaataaatctgtagggggcaaatactttttcatgccactgtatatatTCAGTCGGGTACAGTAATAGGCCCCGCCTTGCTTATGTCACATGATTATATATGACAGAGTAgtacaatacatacacatatacagatgGGGATTCTAGGATCAGAGGTTTAGGGGTGCTGGGCACCCAATGAACCCAACCCAGTAAAGGGGACAGGTGTGTTACTTTCATTATGAATGCAGTGCTGCTGTATTTTgggatttttaaataataataagtattatTAACTGCATAAATTCAGTTTatatgtttacatttatttttgttggtgTTTTTAGCGTGCCTTCTTTTCAAGATGCACTTGATATGGTTAAACCTTGCTGTCTGCATATAATCATAGGTTGAGCAAGACcacatctgattggctaacatttgatgtttattttgttttgtaaccTGATGTTTATTGTTTCACTACATTGTTTCAAGAATATAGTGTTGTCACTAGTGGGGTCATCATTTCATGTCCAGCTCAGTACTGATATGTCCATAATTTTCAGAaagttctttttatttttttatttatttaacaacgTGATTATGAATAAACTTTGAATTACATTGTTTACACGTCACTAGAGGTAGGAATCACAGGGCACCTCATGATATGatattataataatgatgatatcacaatactgcgATATTcgatttatatcacaatatatatgaCAATTCTCTTTGAttcttcacagcatctgtgatACTGAAGAGGACaaaatattactaaataaaCTAATACCAAGAATTATA

Function

NR:

description
uncharacterized protein LOC103038511

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256500.3 True 2781 mRNA 0.40 3 11465165 11470103

Neighbor

gene id symbol gene type direction distance location
gba gba coding upstream 21783 11421534 ~ 11443382 (+)
dap3 dap3 coding upstream 44825 11409458 ~ 11420340 (+)
LOC103022365 jarid2a,LOC108443719,LOC108265176,LOC107657689,LOC107593646,LOC107714830,LOC107595576 coding upstream 183695 11187149 ~ 11281470 (+)
zfat zfat coding upstream 337256 11112055 ~ 11127909 (+)
LOC103032145 LOC108438260 coding upstream 364066 11079535 ~ 11101099 (+)
LOC103045287 si:ch211-257p13.3,LOC108412665,LOC108271642,LOC107685558,LOC107596636 coding downstream 6441 11476544 ~ 11512742 (+)
nbeal2 nbeal2,LOC107596634 coding downstream 73120 11543223 ~ 11650498 (+)
G99255 NA non-coding upstream 59955 11404781 ~ 11405210 (+)
G99244 NA non-coding upstream 100892 11361241 ~ 11364273 (+)
G99119 NA non-coding upstream 289176 11166429 ~ 11175989 (+)
G99115 NA non-coding upstream 310165 11145057 ~ 11155000 (+)
G99114 NA non-coding upstream 324096 11134690 ~ 11141069 (+)
G99269 NA non-coding downstream 39160 11509263 ~ 11510375 (+)
LOC111188200 rusc1 other upstream 162280 11294092 ~ 11302885 (+)
abhd16a abhd16a,LOC107717442,LOC107723554,LOC107582042 other upstream 417475 11028822 ~ 11047690 (+)
LOC103033199 NA other upstream 437741 10999925 ~ 11027424 (+)
G98967 NA other upstream 966647 10493791 ~ 10498518 (+)
G98934 grik5,LOC107551699 other upstream 1286706 10172553 ~ 10178459 (+)

Expression


Co-expression Network