rhbdl1 (rhbdl1,LOC107747857,LOC102790881)


Basic Information

Item Value
gene id rhbdl1
gene name rhbdl1,LOC107747857,LOC102790881
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1322114 ~ 1415632 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256813.3
gggagtgtgtgagaaggagagagagaaagatttacATATAGGTAGAGGCAGCTGCAGAGACGACAAGGCgaaggaaaagagagggagagagacgcGAAGGGCTGAAGCgaaagaagaaggagagagagaggtggatagaaggagggagagagagagcgggctGCATTGTGTGTTTTGGGAAGAGGGAGAAGAAGGCTGTCTTAGCTGCAGtgtagaaaagagagagagcgaaagagagagagagagcctgacCTGAAGCTTGACTGGATTTTCCCTCGGCAAGCGGCCGAACGTGGGCAGAGGACTGGAGGGCACCCCGCAACCACTACTACATCTTCTGCCagcctgcctgcctgtctgtgtgtgtgtgtgagtgtgtgtgtgtgtgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtatgtgtgtgtgccgcCCTCATAGGGGCAGGCGTGTCGAAGCGACTGGCAGGCGCGTGTGCGTGTGCCAGAACgcaagcatgtgtgtgtgtgcatgagtgtgactgtgtgagtgtgtgtgcggcCCTgcgtgtgtgcgtatgtgtgtgtctttctCGTTGTGGCGGTTGGTGAAGCATTGCCCGGTATATGGATAGGAGCTCACTGTTTCAGCTCATTCAGGAGCAGctgGACCCTGAGCAGACTGGTTTCATCGCGGTGGAGAACTTCACCAGTCTGGCCGAGCAGCATGAGCTGCAGCTGGACCCCTCAAAGCTGGACATGCTGCTGGCCCTCGTCCAGAGTGACCAGCGTGGCCACGTCTGCTACCAGGAGCTCATTGAGCTGCTAAGCAGCAAGCGCTCCAGCAGTTTCCGTCGTGCCATTGCGAATGGGCGTCGCACACTGCAGCGAGAGATCTTATTGGACGAGACGGGCCTGGGCGTGTACAAGCGTTTTGTGCGTTACGTGGCGTACGAGATTTTGCCCTGCGAGACGGACAGACGCTGGTACTTCCATCAGAGCAGGCTCtgccctccaccagtctttatGGCCATCATCACCATTGTGCAGATCGTGGTGTTTATGTGTTATGGAGTGAGGCTGAATAAATGGGTTCTGCAGACCTATCAGCCGGACTTCATGAAGAGCCCGCTGGTCTATCACCCAGGTCATCGAGCCCAAGTCTGGAGATTCTTCAGCTACATGTTTATGCATGTTGGgtTAGAGCAGCTGGGCTTTAACGCACTTCTCCAGTTGATGATTGGGGTTCCTCTGGAGATGGTACATGGAATCCTGAGAATCAGCCTACTGTACATGGCAGGAGTCGTGGCAGGGTCTCTGACGGTGTCGATCACGGATATGCGAGCTCCGGTGGTCGGGGGTTCTGGAGGAGTTTATGCCCTCTGCTCTGCACATCTCGCCAACGTTGTTATGaactgGGCCGGGATGAAGTGTCCGTATAAACTGCTGCGGATGATCCTCGCACTCGTCTGCATGAGTTCTGAGGTGGGTCGGGCAGTGTGGCTTCGCTTCTCACCTCCGTTGCCGTCGTCCGGGCCACAGCCAAGCTTCATGGCCCACCTATCGGGGGCTGTGGTGGGCATCAGCATGGGCCTGCTGATCCTGCGCAGCTACGAGGAGTCCCTCCACAAGCAGTGCTCCTGGTGGGTCCTTGTCTTCTCCTTCATCACCTTCCTTCTCTTTGCCATCTTCTGGAACATCTTCGCCTACGAGCTACTGGGCGTTCAGATCCCACCTCCACCCTGATGACACGCCCCCCTTTGCCCCCATCCTAACTAAGCCCCATTCCCAACTCTGAAGACACAGCTTCATTCTAACTCTGGCTGTCGATGGCCACACCCCTTGGGGAGCCAGATCGTTTTGTCCGCCATCCTCCTTTTGTTATAGCTCCGCCCTCTTTTCCTCCACTGGAACAGCAGTGGAGGGAGGGTCCAAATCTGGACAAGGAGATGGATTATAGTGACAGCAATTACAAAAGACATACTTTTCCAAAGTGATATTATTTACTCACGCATccttatttaactttattaacaCGTTCCTAGTTGAATACATTTAAGACCAGATTGAACTTTCAGTGTTAAACCAgtacaaaatcttttttttttctgtttttgggtCCAGTCTGCTctctcattttaatttttaattccaaaaaagaaaaacaatgatttCAAATGGTGCATTATTATACGTATCTCTGTTGGGTCTTACTCTATTCTGTGACTATTCTGGAAAGTTAAATATGGAAATATACAAGGACTTATGTGCTAGACAGCCcacttcaacacacacacacacagaaatacacacaaagacacacacacacagactaccAATAAGAGGATGGATTCTGACCCATCTTGACCTTCCCACTGCAGGGGTCACAAGGTCGAGTCCATGGCGCTATTAGCGTGGACAGAGGCCACTGAAACCAGACCACATGCGTCCCACGTCAACAGTTGCCTTGGTTACCTTTGTCCAGTTGCTAGGTAACCATCGCCCAAGGTGTGAGGTTCACACCCCCGTCTCCCACTGCCCACTCCACCTCTCCCAATAGAACCAGTGGTCAGCTGATCAGATTACGGTGGCCTCGAGAAGTCGAGAAGTTTCAGCGCTGTCCTATCTCCATCCCCTTTCTCTCAAAGAAGAGCATCTAGAACATctaccttcaaaagactctaaAATGGGCATTTTCTCTCCAAGGTTGCCAGATATGTGAAATAAATATACCTCCCCTGTGTGAGAATTTCTGGATGGCAGCATCCTTGTGACTCGCTGCCAGAGAGTCAGAAGAGGAAGTCGGTTCGAAATTCTGCAGTGCCAAGTTACCATTCGATAAGCTGCTACGTCAAATtctacatttaatattgaatatctttatttttatttatgttactaGAGCTTTGCTATGTCTGGGGGTGGGGGGAAGTGTTATTGAAGACACAGGGGTGTCATGGGGGGTGGGTTGATGAGGGAAAAGGGGATGGGATTGGGGGGTCATGAAAAGCACGATGACGTTTAAGActgatgtgtgtgttgttgtgaaTTTTCGtgccatatatttatatttgtacttCTATTTATTCAGATCATCGTTCTGTGCTTGCGGCTTCTGGAAGCTGGTCTCCTCAAACCGAGTGGTGATCATGTGAAATGTGCACTGGAAGAAGGCAGCGCATaaaacagcaaagacacacacacaaacacacaaccttCAAATGAACTGCAGTGAATGCTGGTGCATATCATACATCTGGGCATTTTTCCAAAATGACTTTCTTACCATATGGCTATGTTCCAGTTATTCATATAAACTGCCTTAAGCCCTCTCCCTCATTTCTTCACAAAATATTCCTATTGTACTGTATGTTGTAGTGGCTGGCCAAGGTGAAGTGCAGCAGTGGAACAGTGTCTAGTTAAACAAAACCTGCAATATACTGTAGAGTGACATTAAAAATGTTGGATATCTA
>XM_015607747.2
acacttttttattattagtcaaATAATCCCaatacaaattttttttttgttttatctctGATTACAGCTTTGTACTGAGGCCTACAATGGAGCTCCATGATGCTCCTTAGAAAGCGATAGAAAATGAGGTCCACAGTGGAGCTGCATGATGAGACCCATATGGCTCTGctgGACCCTGAGCAGACTGGTTTCATCGCGGTGGAGAACTTCACCAGTCTGGCCGAGCAGCATGAGCTGCAGCTGGACCCCTCAAAGCTGGACATGCTGCTGGCCCTCGTCCAGAGTGACCAGCGTGGCCACGTCTGCTACCAGGAGCTCATTGAGCTGCTAAGCAGCAAGCGCTCCAGCAGTTTCCGTCGTGCCATTGCGAATGGGCGTCGCACACTGCAGCGAGAGATCTTATTGGACGAGACGGGCCTGGGCGTGTACAAGCGTTTTGTGCGTTACGTGGCGTACGAGATTTTGCCCTGCGAGACGGACAGACGCTGGTACTTCCATCAGAGCAGGCTCtgccctccaccagtctttatGGCCATCATCACCATTGTGCAGATCGTGGTGTTTATGTGTTATGGAGTGAGGCTGAATAAATGGGTTCTGCAGACCTATCAGCCGGACTTCATGAAGAGCCCGCTGGTCTATCACCCAGGTCATCGAGCCCAAGTCTGGAGATTCTTCAGCTACATGTTTATGCATGTTGGgtTAGAGCAGCTGGGCTTTAACGCACTTCTCCAGTTGATGATTGGGGTTCCTCTGGAGATGGTACATGGAATCCTGAGAATCAGCCTACTGTACATGGCAGGAGTCGTGGCAGGGTCTCTGACGGTGTCGATCACGGATATGCGAGCTCCGGTGGTCGGGGGTTCTGGAGGAGTTTATGCCCTCTGCTCTGCACATCTCGCCAACGTTGTTATGaactgGGCCGGGATGAAGTGTCCGTATAAACTGCTGCGGATGATCCTCGCACTCGTCTGCATGAGTTCTGAGGTGGGTCGGGCAGTGTGGCTTCGCTTCTCACCTCCGTTGCCGTCGTCCGGGCCACAGCCAAGCTTCATGGCCCACCTATCGGGGGCTGTGGTGGGCATCAGCATGGGCCTGCTGATCCTGCGCAGCTACGAGGAGTCCCTCCACAAGCAGTGCTCCTGGTGGGTCCTTGTCTTCTCCTTCATCACCTTCCTTCTCTTTGCCATCTTCTGGAACATCTTCGCCTACGAGCTACTGGGCGTTCAGATCCCACCTCCACCCTGATGACACGCCCCCCTTTGCCCCCATCCTAACTAAGCCCCATTCCCAACTCTGAAGACACAGCTTCATTCTAACTCTGGCTGTCGATGGCCACACCCCTTGGGGAGCCAGATCGTTTTGTCCGCCATCCTCCTTTTGTTATAGCTCCGCCCTCTTTTCCTCCACTGGAACAGCAGTGGAGGGAGGGTCCAAATCTGGACAAGGAGATGGATTATAGTGACAGCAATTACAAAAGACATACTTTTCCAAAGTGATATTATTTACTCACGCATccttatttaactttattaacaCGTTCCTAGTTGAATACATTTAAGACCAGATTGAACTTTCAGTGTTAAACCAgtacaaaatcttttttttttctgtttttgggtCCAGTCTGCTctctcattttaatttttaattccaaaaaagaaaaacaatgatttCAAATGGTGCATTATTATACGTATCTCTGTTGGGTCTTACTCTATTCTGTGACTATTCTGGAAAGTTAAATATGGAAATATACAAGGACTTATGTGCTAGACAGCCcacttcaacacacacacacacagaaatacacacaaagacacacacacacagactaccAATAAGAGGATGGATTCTGACCCATCTTGACCTTCCCACTGCAGGGGTCACAAGGTCGAGTCCATGGCGCTATTAGCGTGGACAGAGGCCACTGAAACCAGACCACATGCGTCCCACGTCAACAGTTGCCTTGGTTACCTTTGTCCAGTTGCTAGGTAACCATCGCCCAAGGTGTGAGGTTCACACCCCCGTCTCCCACTGCCCACTCCACCTCTCCCAATAGAACCAGTGGTCAGCTGATCAGATTACGGTGGCCTCGAGAAGTCGAGAAGTTTCAGCGCTGTCCTATCTCCATCCCCTTTCTCTCAAAGAAGAGCATCTAGAACATctaccttcaaaagactctaaAATGGGCATTTTCTCTCCAAGGTTGCCAGATATGTGAAATAAATATACCTCCCCTGTGTGAGAATTTCTGGATGGCAGCATCCTTGTGACTCGCTGCCAGAGAGTCAGAAGAGGAAGTCGGTTCGAAATTCTGCAGTGCCAAGTTACCATTCGATAAGCTGCTACGTCAAATtctacatttaatattgaatatctttatttttatttatgttactaGAGCTTTGCTATGTCTGGGGGTGGGGGGAAGTGTTATTGAAGACACAGGGGTGTCATGGGGGGTGGGTTGATGAGGGAAAAGGGGATGGGATTGGGGGGTCATGAAAAGCACGATGACGTTTAAGActgatgtgtgtgttgttgtgaaTTTTCGtgccatatatttatatttgtacttCTATTTATTCAGATCATCGTTCTGTGCTTGCGGCTTCTGGAAGCTGGTCTCCTCAAACCGAGTGGTGATCATGTGAAATGTGCACTGGAAGAAGGCAGCGCATaaaacagcaaagacacacacacaaacacacaaccttCAAATGAACTGCAGTGAATGCTGGTGCATATCATACATCTGGGCATTTTTCCAAAATGACTTTCTTACCATATGGCTATGTTCCAGTTATTCATATAAACTGCCTTAAGCCCTCTCCCTCATTTCTTCACAAAATATTCCTATTGTACTGTATGTTGTAGTGGCTGGCCAAGGTGAAGTGCAGCAGTGGAACAGTGTCTAGTTAAACAAAACCTGCAATATACTGTAGAGTGACATTAAAAATGTTGGATATCTA
>XM_022674082.1
acacttttttattattagtcaaATAATCCCaatacaaattttttttttgttttatctctGATTACAGCTTTGTACTGAGGCCTACAATGGAGCTCCATGATGCTCCTTAGAAAGCGATAGAAAATGAGGTCCACAGTGGAGCTGCATGATGAGACCCATATGGCTCTGctgGACCCTGAGCAGACTGGTTTCATCGCGGTGGAGAACTTCACCAGTCTGGCCGAGCAGCATGAGCTGCAGCTGGACCCCTCAAAGCTGGACATGCTGCTGGCCCTCGTCCAGAGTGACCAGCGTGGCCACGTCTGCTACCAGGAGCTCATTGAGCTGCTAAGCAGCAAGCGCTCCAGCAGTTTCCGTCGTGCCATTGCGAATGGGCGTCGCACACTGCAGCGAGAGATCTTATTGGACGAGACGGGCCTGGGCGTGTACAAGCGTTTTGTGCGTTACGTGGCGTACGAGATTTTGCCCTGCGAGACGGACAGACGCTGGTACTTCCATCAGAGCAGGCTCtgccctccaccagtctttatGGCCATCATCACCATTGTGCAGATCGTGGTGTTTATGTGTTATGGAGTGAGGCTGAATAAATGGGTTCTGCAGACCTATCAGCCGGACTTCATGAAGAGCCCGCTGGTCTATCACCCAGGTCATCGAGCCCAAGTCTGGAGATTCTTCAGCTACATGTTTATGCATGTTGGgtTAGAGCAGCTGGGCTTTAACGCACTTCTCCAGTTGATGATTGGGGTTCCTCTGGAGATGGTACATGGAATCCTGAGAATCAGCCTACTGTACATGGCAGGAGTCGTGGCAGGGTCTCTGACGGTGTCGATCACGGATATGCGAGCTCCGGTGGTCGGGGGTTCTGGAGGAGTTTATGCCCTCTGCTCTGCACATCTCGCCAACGTTGTTATGaactgGGCCGGGATGAAGTGTCCGTATAAACTGCTGCGGATGATCCTCGCACTCGTCTGCATGAGTTCTGAGGTGGGTCGGGCAGTGTGGCTTCGCTTCTCACCTCCGTTGCCGTCGTCCGGGCCACAGCCAAGCTTCATGGCCCACCTATCGGGGGCTGTGGTGGGCATCAGCATGGGCCTGCTGATCCTGCGCAGCTACGAGGAGTCCCTCCACAAGCAGTGCTCCTGATCATCGTTCTGTGCTTGCGGCTTCTGGAAGCTGGTCTCCTCAAACCGAGTGGTGATCATGTGAAATGTGCACTGGAAGAAGGCAGCGCATaaaacagcaaagacacacacacaaacacacaaccttCAAATGAACTGCAGTGAATGCTGGTGCATATCATACATCTGGGCATTTTTCCAAAATGACTTTCTTACCATATGGCTATGTTCCAGTTATTCATATAAACTGCCTTAAGCCCTCTCCCTCATTTCTTCACAAAATATTCCTATTGTACTGTATGTTGTAGTGGCTGGCCAAGGTGAAGTGCAGCAGTGGAACAGTGTCTAGTTAAACAAAACCTGCAATATACTGTAGAGTGACATTAAAAATGTTGGATATCTA

Function

symbol description
rhbdl1 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RHBDL1 (rhomboid like 1).

NR:

description
rhomboid-related protein 1 isoform X2

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K02857 RHBDL1_2_3; rhomboid-related protein 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256813.3 True 3470 mRNA 0.50 8 1332712 1415632
XM_015607747.2 False 2975 mRNA 0.48 8 1322114 1415632
XM_022674082.1 False 1527 mRNA 0.51 9 1322114 1415632

Neighbor

gene id symbol gene type direction distance location
rhot2 rhot2,LOC107677299,LOC107556678 coding upstream 19335 1277784 ~ 1302779 (+)
wdr90 wdr90,LOC107677127 coding upstream 50612 1224176 ~ 1271502 (+)
nlrc3 nlrc3 coding upstream 112717 1020134 ~ 1209397 (+)
LOC111193408 NA coding upstream 373529 943873 ~ 948585 (+)
cog7 cog7,LOC107717425,LOC107747870 coding upstream 457526 840868 ~ 864588 (+)
wdr24 wdr24,LOC107747855,LOC107717799,LOC107667227 coding downstream 24197 1439829 ~ 1455488 (+)
LOC103029750 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC101073377,LOC103395674,LOC101167724 coding downstream 67054 1482686 ~ 1486444 (+)
c11h7orf50 cunh7orf50 coding downstream 82479 1498111 ~ 1515737 (+)
colec10 NA coding downstream 471969 1887601 ~ 1905908 (+)
mal2 mal2,LOC107683116,LOC107757438 coding downstream 495473 1911105 ~ 1924151 (+)
G96132 NA non-coding upstream 486012 835482 ~ 836102 (+)
G96124 NA non-coding upstream 512584 809321 ~ 809530 (+)
G96116 gnptg non-coding upstream 578375 736741 ~ 743739 (+)
G96073 NA non-coding upstream 736002 585905 ~ 586112 (+)
G96061 NA non-coding upstream 743283 578494 ~ 578831 (+)
G96291 NA non-coding downstream 10626 1426258 ~ 1429217 (+)
G96460 NA non-coding downstream 394757 1810389 ~ 1857895 (+)
G96517 taf2,LOC106594256 non-coding downstream 582239 1997871 ~ 2003611 (+)
G96520 taf2 non-coding downstream 595759 2011391 ~ 2014287 (+)
G96541 NA non-coding downstream 659754 2075386 ~ 2075954 (+)
LOC103040575 ube2i,LOC107677193 other upstream 513540 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 1973419 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 2449358 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 3549838 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 4391936 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 4864690 6280322 ~ 6382717 (+)

Expression


Co-expression Network