wdr24 (wdr24,LOC107747855,LOC107717799,LOC107667227)


Basic Information

Item Value
gene id wdr24
gene name wdr24,LOC107747855,LOC107717799,LOC107667227
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1439829 ~ 1455488 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256815.3
GAATGCTCCACATCCGGTTCCTCTTTCTCCTGCAGGTTTGTTTTGAAAGATCACTGTTTTGCATGGGGCACGTGCAGGGGACTGAGGTGCCCGTGCCTTGTGTTGACATGAGGAGACATGGTGAACCGGATAAACTTCCAGTGATGAACTATACAGTAACTACAGGTCACTAGTGCTGTGTTCATTAAAGCAGAGgcTGACATGGAGAAGATGAGCTGTCCTAGCACGGTCAGCGGCCGAACCATGTTCTGCCACCTGGACGCTCCGGCCAATGCCATCAGTGTATGCCGGGATGCTACACAGGTGGTAGTTGCTGGACGGAACATCTTTAAGATCTATGCGCTGGAGGAGGACAGCTTTGTGGAGCGTCTGAATCTCCGCGTGGGCCGCAAGCCCTCACTGAACTTCAGCTGTGCTGACGTGATGTGGCACCAGATGGAGGAGAACCTGCTGGCCACGGCTGCCACCAATGGGGCAGTGGTGACGTGGAACCTGGCGCGGCCGTGCCGCAACAAGCAGGAGCACCTGTTCACAGAGCACAAACGCACTGTAAACAAGGTGTGTTTCCACCCGACTGAGGTCCACATGCTGCTGTCTGGATCGCAGGACGGtttcatgaagtgcttcgaccTGCGCAAGAAAGAAAGTGTCAGCACCTTCTCTGGTCAGTCGGAGAGTGTTCGAGATGTGCAGTTTAGCATGAAGGATTATTTCACGTTCGCAGCATCATTTGAGAATGGTAATGTGCAGCTTTGGGACATTCGCAGACCCGACCGCTATGAGAGGATGTTCACAGCACACACAGGGCCAGTTTTCTGCTGCGACTGGCACCCTGAGGACAGAGGATGGCTGGCTACAGGTGGTCGGGACAAGATGGTCAAAGTGTGGGATATGACGACCAATAGGGCCAAAGAGATCTATTGTGTGCAGACCATCGCTTCAGTGGCACGGGTCAAGTGGCGTCCGGAGCGGCGCTGGCATCTGGCCACCTGCTCTATGATGGTGGACCACAACATCTACGTTTGGGACGTCCGTCGCCCTTTCATCCCCTTTGCCACTTTCGAGGAGCACAAGGACGTCACTACAGGGATTGTCTGGCGCCACCAGCACGACCCCTACGTGCTGCTGTCTGGCTCCAAGGACAGTACGCTCTACCAGCACATGTTCAAGGACGCCAGTCGGCCTGTTGACCGGGCCAACCCCGAGGGGCTCTGCTTCGGACTGTTCGGTGACCTGGCCTTTGCGGCCAAGGAGAGCCTGATGACGGGTGAGGCTGGACGCAAGCCGTACCCAGCCGGCGACCGCCGCTACCCCATCTTCTTTTTTAAGAAGCCGGATGTGACGGAGCAGTTTGCGCAGGTGGCGAGTGCTCTGAGCGTGTTTGAGAGTGAGTCGGACGGCAGCAGCAGAATGGACTGGTTCATTAAGACAGCCCGCAGGTATCTGCTGAGTGGGAAACCcttcgctgaactctgtgacCACAACGCTAAGGTCGCCAAGGAGCTGAATAGacctcagGTGTCTACCACATGGACCATGCTACGAATCATGTTTTCTGACCCAGGAAACCCAGCCCCACCAGCCAATCACAACATGAGTAAACTGGGAAATATCCCCCTCATGAACAGttttaatCTGAAGGAGATGAGTTCTGCTCTGAacgagagaaacaaagagaaccGACAGGATAACCTACACAACCTGGAGACAAACCTCAACAATGACGAGAATGAAGAGACGGAGGGCAGCGATGGTCAGGCTGAGTATCTGTTTGGAGATGCTGAGTTGGACGATGATGACCTCTATAGCATGGAGCATGAAAACCAGGCAGAGGAGGCAGAGTTTTCTCTCCCTCAGGAAGCGTTTCCTCTGAGGCATGAGATCGTGGACCACCCGGCCGCCCCAGAGCCTCCAGCCGAGAAGCCGGAGTCTCCGCAGGTGAGCGGGAGCGAGGCGGAGAGTTTCTGCCTGACACCCATGGAATCCTTCAGCCTCATCTCCGTCTCCCAGCTGCTCTACCAGCCTCAGCTGACCCCCAGCTTCTTCAGCCCCGTCGTCAGGGAGATGCTGGACCACTATGCTGAGCAAGGAGATGTGCAGATGGCCGTGTCCGTCCTCATTGTGCTCGGAGACCGCATTCGCAAGGAGATCGATGAGCTCACGCAGGAACACTGGTACATGTCCTACATTGACCTGCTGCAGCGGTTCGAGCTGTGGAACGTCAGTAATGAAGTGATTAAACTAAGCACCTGCAGTGCAATCACCTGCCTGAACCAGGCCTCCACCACTCTGCACATCAACTGCAGCAACTGCAAACGACCCATGAGCAATAAGGGCTGGATCTGTGATCgGTGTCAccagtgtgcgagtgtgtgtgcagtgtgtcaTCATGTGGTTAAGGGCTTGTTCGTCTGGTGTCAGGGCTGCAGCCACGGAGGCCATCTGGAGCACGTCATGGAGTGGCTCAAAAGCTCCAACCACTGTCCGGCAGGCTGCGGGCATCTGTGTGAAtacacctgaaacacacacccacacttcCTTTTTCTCTATGCCTTAAATTAAAGACATTCTTTCTCACATTCAGTCACACACACTTGGCACTTTGACAGTAGCCAGCAGGGTGTGTATGTTTTTGGATTACATTATAAAGGTACTGAGCTGTAAACAAGTGAAGGGCTGTGACTGAAATGGATCCCTACTCCCACATTAGTATTGCACTATATAGGGGGTAGAAACAAGTAAATTTGGATACTCAAATCATCATTTACGTGTCAGCACCAGTCGCATAGAGGCGTCTTATTGCATAGAcgaatcttgtttttttttttgtttttttgtttttttttcaccattttctccccaatttacaaggccaataaccca
>XM_022674083.1
ttttttaactcatttttattatcgttattattattatcgctGTATAAAACAGAATCAACACCAGCCGAGAagagcagacacacacagagatacagagcCGGAGCGGCAGGTTGAGTTACTGCAGCGGCGGAGGAGCAGCAGAGAGAGATCACTGTTTTGCATGGGGCACGTGCAGGGGACTGAGGTGCCCGTGCCTTGTGTTGACATGAGGAGACATGGTGAACCGGATAAACTTCCAGTGATGAACTATACAGTAACTACAGGTCACTAGTGCTGTGTTCATTAAAGCAGAGgcTGACATGGAGAAGATGAGCTGTCCTAGCACGGTCAGCGGCCGAACCATGTTCTGCCACCTGGACGCTCCGGCCAATGCCATCAGTGTATGCCGGGATGCTACACAGGTGGTAGTTGCTGGACGGAACATCTTTAAGATCTATGCGCTGGAGGAGGACAGCTTTGTGGAGCGTCTGAATCTCCGCGTGGGCCGCAAGCCCTCACTGAACTTCAGCTGTGCTGACGTGATGTGGCACCAGATGGAGGAGAACCTGCTGGCCACGGCTGCCACCAATGGGGCAGTGGTGACGTGGAACCTGGCGCGGCCGTGCCGCAACAAGCAGGAGCACCTGTTCACAGAGCACAAACGCACTGTAAACAAGGTGTGTTTCCACCCGACTGAGGTCCACATGCTGCTGTCTGGATCGCAGGACGGtttcatgaagtgcttcgaccTGCGCAAGAAAGAAAGTGTCAGCACCTTCTCTGGTCAGTCGGAGAGTGTTCGAGATGTGCAGTTTAGCATGAAGGATTATTTCACGTTCGCAGCATCATTTGAGAATGGTAATGTGCAGCTTTGGGACATTCGCAGACCCGACCGCTATGAGAGGATGTTCACAGCACACACAGGGCCAGTTTTCTGCTGCGACTGGCACCCTGAGGACAGAGGATGGCTGGCTACAGGTGGTCGGGACAAGATGGTCAAAGTGTGGGATATGACGACCAATAGGGCCAAAGAGATCTATTGTGTGCAGACCATCGCTTCAGTGGCACGGGTCAAGTGGCGTCCGGAGCGGCGCTGGCATCTGGCCACCTGCTCTATGATGGTGGACCACAACATCTACGTTTGGGACGTCCGTCGCCCTTTCATCCCCTTTGCCACTTTCGAGGAGCACAAGGACGTCACTACAGGGATTGTCTGGCGCCACCAGCACGACCCCTACGTGCTGCTGTCTGGCTCCAAGGACAGTACGCTCTACCAGCACATGTTCAAGGACGCCAGTCGGCCTGTTGACCGGGCCAACCCCGAGGGGCTCTGCTTCGGACTGTTCGGTGACCTGGCCTTTGCGGCCAAGGAGAGCCTGATGACGGGTGAGGCTGGACGCAAGCCGTACCCAGCCGGCGACCGCCGCTACCCCATCTTCTTTTTTAAGAAGCCGGATGTGACGGAGCAGTTTGCGCAGGTGGCGAGTGCTCTGAGCGTGTTTGAGAGTGAGTCGGACGGCAGCAGCAGAATGGACTGGTTCATTAAGACAGCCCGCAGGTATCTGCTGAGTGGGAAACCcttcgctgaactctgtgacCACAACGCTAAGGTCGCCAAGGAGCTGAATAGacctcagGTGTCTACCACATGGACCATGCTACGAATCATGTTTTCTGACCCAGGAAACCCAGCCCCACCAGCCAATCACAACATGAGTAAACTGGGAAATATCCCCCTCATGAACAGttttaatCTGAAGGAGATGAGTTCTGCTCTGAacgagagaaacaaagagaaccGACAGGATAACCTACACAACCTGGAGACAAACCTCAACAATGACGAGAATGAAGAGACGGAGGGCAGCGATGGTCAGGCTGAGTATCTGTTTGGAGATGCTGAGTTGGACGATGATGACCTCTATAGCATGGAGCATGAAAACCAGGCAGAGGAGGCAGAGTTTTCTCTCCCTCAGGAAGCGTTTCCTCTGAGGCATGAGATCGTGGACCACCCGGCCGCCCCAGAGCCTCCAGCCGAGAAGCCGGAGTCTCCGCAGGTGAGCGGGAGCGAGGCGGAGAGTTTCTGCCTGACACCCATGGAATCCTTCAGCCTCATCTCCGTCTCCCAGCTGCTCTACCAGCCTCAGCTGACCCCCAGCTTCTTCAGCCCCGTCGTCAGGGAGATGCTGGACCACTATGCTGAGCAAGGAGATGTGCAGATGGCCGTGTCCGTCCTCATTGTGCTCGGAGACCGCATTCGCAAGGAGATCGATGAGCTCACGCAGGAACACTGGTACATGTCCTACATTGACCTGCTGCAGCGGTTCGAGCTGTGGAACGTCAGTAATGAAGTGATTAAACTAAGCACCTGCAGTGCAATCACCTGCCTGAACCAGGCCTCCACCACTCTGCACATCAACTGCAGCAACTGCAAACGACCCATGAGCAATAAGGGCTGGATCTGTGATCgGTGTCAccagtgtgcgagtgtgtgtgcagtgtgtcaTCATGTGGTTAAGGGCTTGTTCGTCTGGTGTCAGGGCTGCAGCCACGGAGGCCATCTGGAGCACGTCATGGAGTGGCTCAAAAGCTCCAACCACTGTCCGGCAGGCTGCGGGCATCTGTGTGAAtacacctgaaacacacacccacacttcCTTTTTCTCTATGCCTTAAATTAAAGACATTCTTTCTCACATTCAGTCACACACACTTGGCACTTTGACAGTAGCCAGCAGGGTGTGTATGTTTTTGGATTACATTATAAAGGTACTGAGCTGTAAACAAGTGAAGGGCTGTGACTGAAATGGATCCCTACTCCCACATTAGTATTGCACTATATAGGGGGTAGAAACAAGTAAATTTGGATACTCAAATCATCATTTACGTGTCAGCACCAGTCGCATAGAGGCGTCTTATTGCATAGAcgaatcttgtttttttttttgtttttttgtttttttttcaccattttctccccaatttacaaggccaataaccca

Function

symbol description
wdr24 Predicted to act upstream of or within autophagy and positive regulation of TOR signaling. Predicted to be located in lysosomal membrane. Orthologous to human WDR24 (WD repeat domain 24).

NR:

description
GATOR complex protein WDR24

GO: NA

KEGG:

id description
K20408 WDR24; WD repeat-containing protein 24

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256815.3 False 2883 mRNA 0.53 12 1439829 1455488
XM_022674083.1 True 2981 mRNA 0.53 12 1439892 1455488

Neighbor

gene id symbol gene type direction distance location
rhbdl1 rhbdl1,LOC107747857,LOC102790881 coding upstream 24197 1322114 ~ 1415632 (+)
rhot2 rhot2,LOC107677299,LOC107556678 coding upstream 137050 1277784 ~ 1302779 (+)
wdr90 wdr90,LOC107677127 coding upstream 168327 1224176 ~ 1271502 (+)
nlrc3 nlrc3 coding upstream 230432 1020134 ~ 1209397 (+)
LOC111193408 NA coding upstream 491244 943873 ~ 948585 (+)
LOC103029750 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC101073377,LOC103395674,LOC101167724 coding downstream 27198 1482686 ~ 1486444 (+)
c11h7orf50 cunh7orf50 coding downstream 42623 1498111 ~ 1515737 (+)
colec10 NA coding downstream 432113 1887601 ~ 1905908 (+)
mal2 mal2,LOC107683116,LOC107757438 coding downstream 455617 1911105 ~ 1924151 (+)
nov NA coding downstream 495046 1950534 ~ 1955066 (+)
G96291 NA non-coding upstream 10612 1426258 ~ 1429217 (+)
G96273 NA non-coding upstream 17948 1382425 ~ 1421881 (+)
G96289 NA non-coding upstream 47471 1392008 ~ 1392358 (+)
G96281 NA non-coding upstream 48297 1341561 ~ 1391532 (+)
G96282 NA non-coding upstream 95381 1344037 ~ 1344448 (+)
G96460 NA non-coding downstream 354901 1810389 ~ 1857895 (+)
G96517 taf2,LOC106594256 non-coding downstream 542383 1997871 ~ 2003611 (+)
G96520 taf2 non-coding downstream 555903 2011391 ~ 2014287 (+)
G96541 NA non-coding downstream 619898 2075386 ~ 2075954 (+)
LOC111193411 NA non-coding downstream 769094 2224582 ~ 2227412 (+)
LOC103040575 ube2i,LOC107677193 other upstream 631255 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 1933563 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 2409502 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 3509982 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 4352080 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 4824834 6280322 ~ 6382717 (+)

Expression


Co-expression Network