LOC103029750 (h3f3b,H3F3A,LOC105909691,LOC107388308,LOC101073377,LOC103395674,LOC101167724)


Basic Information

Item Value
gene id LOC103029750
gene name h3f3b,H3F3A,LOC105909691,LOC107388308,LOC101073377,LOC103395674,LOC101167724
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1482686 ~ 1486444 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256824.3
GCAGATGGCGTCACCGATCGCATAAATAGGGGGCAGGGAGGAAGGCTACCCACGGTCGACGGTCGTTGTTTTGGGTGTTCGGAGTAATCGAAACGAAACAGgtAAGAGGACTACTCGAGTGCGATGGCTCGTACCAAGCAGACTGCGCGTAAATCCACTGGAGGCAAAGCCCCCAGGAAGCAGTTGGCCACTAAAGCTGCCCGCAAAAGCGCGCCCTCCACTGGCGGAGTGAAGAAGCCCCATAGATACCGtcCTGGTACTGTGGCTCTTCGTGAGATTCGTCGGTACCAGAAGTCCACTGAGCTTCTGATCCGCAAGTTACCCTTCCAGCGCCTGGTGAGGGAGATTGCTCAGGACTTCAAGACGGATCTCCGCTTCCAGAGTGCTGCTATTGGAGCTCTGCAGGAAGCTAGTGAGGCATACCTGGTGGGTCTCTTTGAGGACACTAACCTGTGCGCCATCCACGCAAAACGTGTCACCATCATGCCCAAGGACATCCAGCTGGCTCGGCGGATCCGCGGCGAGCGTGCTTAGATGGCTCATTCTATTTAATCCACCTTTTTtgaaggggggtggggggagcaggtgtttagggggggggggggttcttaTTCAACTACAAATGCTTGTTGTAGTTTTaagcttacttttttttttgtaattttttttttggtagttgTGGCAGGGGAGGGGAATCTTGTGGTTCTTCAGCGTGACAGTAGGGGGTGGTGTCTGAACATTCCGGGAGCTCCTCTCAGGGTTTTAAAGTTTGTATTTTAGACTTTGGTATACCTCTGCCTGTGTGCTATAGTCTGCATGCTACATGGTGATATTAGGACATGTCCATTTTATTTCTATCATTCTATTTTTCTCCTCCATTGTGGCCATTTGGTTGTAAATAAACTTTCCACTACCTCA

Function

symbol description
h3f3a Part of nucleosome. Is expressed in pharyngeal arch. Orthologous to human H3-3A (H3.3 histone A).
h3f3b Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and nucleosomal DNA binding activity. Involved in brain development and response to hormone. Predicted to be located in chromosome, telomeric region and nuclear chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H3-3B (H3.3 histone B).

NR:

description
PREDICTED: histone H3-like centromeric protein CSE4

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0006629 lipid metabolic process biological_process
GO:1902340 negative regulation of chromosome condensation biological_process
GO:0006997 nucleus organization biological_process
GO:0007596 blood coagulation biological_process
GO:0009725 response to hormone biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0007420 brain development biological_process
GO:0007140 male meiotic nuclear division biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007155 cell adhesion biological_process
GO:0090230 regulation of centromere complex assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0001740 Barr body cellular_component
GO:0005576 extracellular region cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005700 polytene chromosome cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K11253 H3; histone H3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256824.3 True 918 mRNA 0.51 4 1482686 1486444

Neighbor

gene id symbol gene type direction distance location
wdr24 wdr24,LOC107747855,LOC107717799,LOC107667227 coding upstream 27198 1439829 ~ 1455488 (+)
rhbdl1 rhbdl1,LOC107747857,LOC102790881 coding upstream 67054 1322114 ~ 1415632 (+)
rhot2 rhot2,LOC107677299,LOC107556678 coding upstream 179907 1277784 ~ 1302779 (+)
wdr90 wdr90,LOC107677127 coding upstream 211184 1224176 ~ 1271502 (+)
nlrc3 nlrc3 coding upstream 273289 1020134 ~ 1209397 (+)
c11h7orf50 cunh7orf50 coding downstream 11667 1498111 ~ 1515737 (+)
colec10 NA coding downstream 401157 1887601 ~ 1905908 (+)
mal2 mal2,LOC107683116,LOC107757438 coding downstream 424661 1911105 ~ 1924151 (+)
nov NA coding downstream 464090 1950534 ~ 1955066 (+)
LOC103032920 NA coding downstream 588164 2074608 ~ 2085398 (+)
G96286 NA non-coding upstream 25799 1364784 ~ 1456887 (+)
G96291 NA non-coding upstream 53469 1426258 ~ 1429217 (+)
G96273 NA non-coding upstream 60805 1382425 ~ 1421881 (+)
G96289 NA non-coding upstream 90328 1392008 ~ 1392358 (+)
G96281 NA non-coding upstream 91154 1341561 ~ 1391532 (+)
G96460 NA non-coding downstream 323945 1810389 ~ 1857895 (+)
G96517 taf2,LOC106594256 non-coding downstream 511427 1997871 ~ 2003611 (+)
G96520 taf2 non-coding downstream 524947 2011391 ~ 2014287 (+)
G96541 NA non-coding downstream 588942 2075386 ~ 2075954 (+)
LOC111193411 NA non-coding downstream 738138 2224582 ~ 2227412 (+)
LOC103040575 ube2i,LOC107677193 other upstream 674112 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 1902607 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 2378546 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 3479026 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 4321124 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 4793878 6280322 ~ 6382717 (+)

Expression


Co-expression Network