colec10


Basic Information

Item Value
gene id colec10
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1887601 ~ 1905908 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256830.3
TTCTGTCCACTTGACCACAGTGTTGCAGTCTTCAATTAAAGACATGGGTGGAAAAACTTTCATCAGGAATATCTTTCTACTGCTTCTGGTTCTCACCATTGGTGAGGTTTTCACCATTGATGTCTGTTCTAACACTATTCTACCTGGATCAAAAGgtGACCAAGGCGAAGTTGGAGATAAAGGAGATGAAGGAAGATTGGGGAAATCTGGCCCCCCTGGATACAGAGGCCTGCCAGGAGAGAGCGGCGAGAAGGGGGAGCATGGCCGGATAGGAAAGATGGGCCCTGCAGGAGAAAGAGGGGAAAAAGGCGAGCAAGGAATGCACGGACCTTCCGGACTAAAAGGAAAAGCAGGCACTACCTGTGACTGCGGGAGGTACAGGAAGGTTGTTGGGCAGATGGAAATCAACATAAACAGACTGAAAAATAGTGTCAAGTTTGTGAAAAATGTTCTTCTGGGCATTAAGGAGACAGAGGAGAAGTTTTACCTGCTGGTAAAGGAGGCTCGCAGGTACCGTGATGCCCTCATGAACTGTAAGCTGCGGGGCGGAACTCTGGCTATGCCTAAGAACACAAACACCAAAACACTGCTGAGCGGATATATCAGCGAGGCCAGCCTCACCCACGTGTTCATCGGCCTGCGGTCAGCAGAGGCTGGAGGAGGATATGTGTTCGCTGATGGTGGAGCTCTGATTAACTCCACAGCCTGGGGTCTGGAGGTGCCATCCGTGGTCAGCAACAGCAGCTGTGTACAGATGGGATCTAGTGGGGCTTGGAGTCAGACGGAATGTGACACTGCAAAGTATTTCATATGCGAGTtttcaagaaaataaaaagtgtcctatacactgtaaacacaaTTTTCACAtcaagtctgttttacattacattggatatttccaaatatacctAAACTCTTTTGAGTTATAAGAACATTTGTGGCCAcgtatatatttaaacagagatttaaatatgttaaatgtttgagttaaatcaaTTTATAATTACTCAGTTCATCCTGTTACCTTtgaccatttctttttttttcttttttttttcaaatttttcccattttctccccaatttctCAGCAAAtcaccc

Function

NR:

description
collectin-10-like

GO: NA

KEGG:

id description
K10065 COLEC10; collectin sub-family member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256830.3 True 1100 mRNA 0.44 7 1887601 1905908

Neighbor

gene id symbol gene type direction distance location
c11h7orf50 cunh7orf50 coding upstream 371864 1498111 ~ 1515737 (+)
LOC103029750 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC101073377,LOC103395674,LOC101167724 coding upstream 401157 1482686 ~ 1486444 (+)
wdr24 wdr24,LOC107747855,LOC107717799,LOC107667227 coding upstream 432113 1439829 ~ 1455488 (+)
rhbdl1 rhbdl1,LOC107747857,LOC102790881 coding upstream 471969 1322114 ~ 1415632 (+)
rhot2 rhot2,LOC107677299,LOC107556678 coding upstream 584822 1277784 ~ 1302779 (+)
mal2 mal2,LOC107683116,LOC107757438 coding downstream 5197 1911105 ~ 1924151 (+)
nov NA coding downstream 44626 1950534 ~ 1955066 (+)
LOC103032920 NA coding downstream 168700 2074608 ~ 2085398 (+)
prpf3 prpf3 coding downstream 204969 2110877 ~ 2121710 (+)
ice1 NA coding downstream 220375 2126283 ~ 2148738 (+)
G96460 NA non-coding upstream 29706 1810389 ~ 1857895 (+)
G96286 NA non-coding upstream 430714 1364784 ~ 1456887 (+)
G96291 NA non-coding upstream 458384 1426258 ~ 1429217 (+)
G96273 NA non-coding upstream 465720 1382425 ~ 1421881 (+)
G96289 NA non-coding upstream 495243 1392008 ~ 1392358 (+)
G96517 taf2,LOC106594256 non-coding downstream 91963 1997871 ~ 2003611 (+)
G96520 taf2 non-coding downstream 105483 2011391 ~ 2014287 (+)
G96541 NA non-coding downstream 169478 2075386 ~ 2075954 (+)
LOC111193411 NA non-coding downstream 318674 2224582 ~ 2227412 (+)
G96582 NA non-coding downstream 356131 2262039 ~ 2265095 (+)
LOC103040575 ube2i,LOC107677193 other upstream 1079027 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 1483143 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 1959082 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 3059562 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 3901660 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 4374414 6280322 ~ 6382717 (+)

Expression


Co-expression Network